RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TNFSF11O14788 317 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF432O94892 652 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 OR2M3Q8NG83 312 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 OR8B12Q8NGG6 310 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 OR2AE1Q8NHA4 323 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ST8SIA1Q92185 356 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 C7orf50Q9BRJ6 194 aaKnown RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF416Q9BWM5 594 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 C1orf198Q9H425 327 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 CYB5R1Q9UHQ9 305 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 UBE2QL1A1L167 161 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 TRAF3IP2O43734 574 aaPredicted RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 SRSF10O75494 262 aaKnown RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 HTR3BO95264 441 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 TGM6O95932 706 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 VSIG8P0DPA2 414 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 HRH1P35367 487 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF704Q6ZNC4 412 aaPredicted RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 FAM109AQ8N4B1 249 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 PIGTQ969N2 578 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 DMRTA2Q96SC8 542 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF275Q9NSD4 429 aaPredicted RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 ZNF581Q9P0T4 197 aa14.98□□□□□ -0.01
USP28-208ENST00000540438 NOP16Q9Y3C1 178 aaKnown RBP14.98□□□□□ -0.01
USP28-208ENST00000540438 NUPL2O15504 423 aaKnown RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 UMODP07911 640 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ZNF20P17024 532 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ZNF767PQ75MW2 155 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 SLC36A1Q7Z2H8 476 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ADGRE4PQ86SQ3 457 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 OR2AK2Q8NG84 335 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 OR5L2Q8NGL0 311 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 EDAQ92838 391 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 MFRPQ9BY79 579 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 GPN3Q9UHW5 284 aaPredicted RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 B3GALT1Q9Y5Z6 326 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 TMEM82A0PJX8 343 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 TRAPPC6AO75865 159 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ACHEP22303 614 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 NFYAP23511 347 aaPredicted RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 BDKRB2P30411 391 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 MAP2K6P52564 334 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 CHAF1BQ13112 559 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ZNF385CQ66K41 422 aaPredicted RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 GLIPR1L1Q6UWM5 242 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 TMEM105Q8N8V8 129 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 ADAD2Q8NCV1 583 aaKnown RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 RNF133Q8WVZ7 376 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 NARFLQ9H6Q4 476 aa14.97□□□□□ -0.01
USP28-208ENST00000540438 GPN1Q9HCN4 374 aaPredicted RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 CHCHD2Q9Y6H1 151 aaPredicted RBP14.97□□□□□ -0.01
USP28-208ENST00000540438 EEF1E1-BLOC1S5C9J1V9 151 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 SULT1B1O43704 296 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 CSF1P09603 554 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 OR4E1P0C645 316 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ZNF93P35789 620 aaPredicted RBP14.96□□□□□ -0.01
USP28-208ENST00000540438 GALNTL5Q7Z4T8 443 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 GPX8Q8TED1 209 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 PDCD10Q9BUL8 212 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ALKBH4Q9NXW9 302 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 RDH8Q9NYR8 311 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 C13orf42A0A1B0GVH6 325 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 C3orf80F5H4A9 247 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 FAHP16930 419 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 IGFBP3P17936 291 aaPredicted RBP14.96□□□□□ -0.01
USP28-208ENST00000540438 FAUP35544 74 aaKnown RBP14.96□□□□□ -0.01
USP28-208ENST00000540438 FAM166AQ6J272 317 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 DNM1P34Q6PK57 102 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ZNF584Q8IVC4 421 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 OR1M1Q8NGA1 313 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ROBO4Q8WZ75 1007 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ST8SIA4Q92187 359 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 ST6GALNAC5Q9BVH7 336 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 TGIF2Q9GZN2 237 aa14.96□□□□□ -0.01
USP28-208ENST00000540438 A6NIZ1 184 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 CRTAPO75718 401 aaPredicted RBP14.95□□□□□ -0.02
USP28-208ENST00000540438 IGHG1P01857 330 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 HLA-AP01891 365 aaKnown RBP14.95□□□□□ -0.02
USP28-208ENST00000540438 PGA4P0DJD7 388 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 PGA3P0DJD8 388 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 GLI4P10075 376 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 PTGS2P35354 604 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 CX3CR1P49238 355 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 RAP1BP61224 184 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 RAP1AP62834 184 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 GABREP78334 506 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 OR6M1Q8NGM8 313 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 NUBPLQ8TB37 319 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 PILRBQ9UKJ0 227 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 KCNK7Q9Y2U2 307 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 IGLV3-12A0A075B6K2 115 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 RAB27BO00194 218 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 ATPAF1Q5TC12 328 aaPredicted RBP14.95□□□□□ -0.02
USP28-208ENST00000540438 ZNF813Q6ZN06 617 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 OPN4Q9UHM6 478 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 VSIG4Q9Y279 399 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 B3GALT5Q9Y2C3 310 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 HS3ST3B1Q9Y662 390 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 NAP1L6A6NFF2 107 aa14.95□□□□□ -0.02
USP28-208ENST00000540438 KLK3P07288 261 aaPredicted RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms