RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CD80P33681 288 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 OR1D4P47884 311 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 PLCXD2Q0VAA5 305 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 KIR2DS5Q14953 304 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 C1orf140Q5VVS0 124 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 BHLHE23Q8NDY6 225 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SLC30A7Q8NEW0 376 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 MRGPRFQ96AM1 343 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 C5orf34Q96MH7 638 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SEC11CQ9BY50 192 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 ADAM19Q9H013 955 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SLC2A8Q9NY64 477 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 H0YIZ8 118 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 LRP3O75074 770 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 NSA2O95478 260 aaKnown RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 H2AFB1P0C5Y9 115 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 ABOP16442 354 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF20P17024 532 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 HLA-GP17693 338 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 OR3A2P47893 321 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CX3CR1P49238 355 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SMAD2Q15796 467 aaKnown RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 PRTGQ2VWP7 1150 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 DMRTC1Q5HYR2 192 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 PHF19Q5T6S3 580 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SLC22A24Q8N4F4 322 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 GPR119Q8TDV5 335 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 C14orf79Q96F83 325 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 GPER1Q99527 375 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 NICN1Q9BSH3 213 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 BANF2Q9H503 90 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 OR5AC2Q9NZP5 309 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CARHSP1Q9Y2V2 147 aaKnown RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 MUC22E2RYF6 1773 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 OR5K4A6NMS3 321 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 LDLRAD4O15165 306 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 VSIG8P0DPA2 414 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CLDN6P56747 220 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 UNC119Q13432 240 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 ELAVL1Q15717 326 aaKnown RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 C1orf100Q5SVJ3 147 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 SLC16A13Q7RTY0 426 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CDC6Q99741 560 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 NRIP2Q9BQI9 281 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 RNF126Q9BV68 326 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 PARP12Q9H0J9 701 aaKnown RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM184BQ9Y519 407 aaPredicted RBP10.05□□□□□ -0.8
SYNE1-237ENST00000539504 CLDN16Q9Y5I7 305 aa10.05□□□□□ -0.8
SYNE1-237ENST00000539504 ARPC4-TTLL3A0A0A6YYG9 625 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 WIPF3A6NGB9 483 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SFTA3P0C7M3 94 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 CD79AP11912 226 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 CD1CP29017 333 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TNFRSF4P43489 277 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SLC37A1P57057 533 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 FAHD2BQ6P2I3 314 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TTLL10Q6ZVT0 673 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TERB2Q8NHR7 220 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 FAHD2AQ96GK7 314 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 MRGPRX1Q96LB2 322 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SLC46A1Q96NT5 459 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 GAS2L1Q99501 681 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 LPAR3Q9UBY5 353 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 RNASEK-C17orf49H0YIS7 233 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 LINC01387J3KSC0 135 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 MT-ATP6P00846 226 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 RAB6AP20340 208 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 PTGFRP43088 359 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 IGLV3-21P80748 117 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM128Q5BJH2 165 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TMEM240Q5SV17 173 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 EIF5AL1Q6IS14 154 aaKnown RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 DNM1P34Q6PK57 102 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 IL34Q6ZMJ4 242 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SLC29A4Q7RTT9 530 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 NUP54Q7Z3B4 507 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 OR51F2Q8NH61 342 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF519Q8TB69 540 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 PTPMT1Q8WUK0 201 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SULT4A1Q9BR01 284 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ST6GALNAC5Q9BVH7 336 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SMIM3Q9BZL3 60 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 FOXQ1Q9C009 403 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ACKR4Q9NPB9 350 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 RPS10P5Q9NQ39 176 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 G6PC2Q9NQR9 355 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 C1orf196B1AJZ1 125 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 SDCBPO00560 298 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 KNG1P01042 644 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 CA3P07451 260 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 AMY2BP19961 511 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ZNF93P35789 620 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 RAB32Q13637 225 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 MICBQ29980 383 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 PTCRAQ6ISU1 281 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 PAQR4Q8N4S7 273 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ADAMTS18Q8TE60 1221 aa10.04□□□□□ -0.8
SYNE1-237ENST00000539504 ADAT3Q96EY9 351 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 NECAB3Q96P71 396 aaPredicted RBP10.04□□□□□ -0.8
SYNE1-237ENST00000539504 TGM7Q96PF1 710 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms