RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 MAGEA12P43365 314 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 RFX3P48380 749 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 GSK3BP49841 420 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PNLIPRP2P54317 469 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CTBP2P56545 445 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 NDUFA6P56556 154 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TAS2R38P59533 333 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 STXBP1P61764 594 aaKnown RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 TIMM10P62072 90 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 RANP62826 216 aaKnown RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 TLE2Q04725 743 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 MXD1Q05195 221 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SPOCK1Q08629 439 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PJVKQ0ZLH3 352 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TMEM115Q12893 351 aaPredicted RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 MAMLD1Q13495 774 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HTR4Q13639 388 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 DPYSL3Q14195 570 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZNF345Q14585 488 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CLINT1Q14677 625 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HERPUD1Q15011 391 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR4D1Q15615 310 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 NTRK2Q16620 822 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TSTQ16762 297 aaKnown RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 NDUFA9Q16795 377 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 GSG1Q2KHT4 349 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SOWAHAQ2M3V2 549 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SMIM21Q3B7S5 101 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HIKESHIQ53FT3 197 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TFDP3Q5H9I0 405 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CBWD3Q5JTY5 395 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CBWD5Q5RIA9 395 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SPATA46Q5T0L3 261 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 C1orf194Q5T5A4 169 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 RNLSQ5VYX0 342 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR4F3Q6IEY1 312 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR10K2Q6IF99 312 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR6B2Q6IFH4 312 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 FAM71E1Q6IPT2 247 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SLC39A4Q6P5W5 647 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CNIH2Q6PI25 160 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PET117Q6UWS5 81 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 FBXW12Q6X9E4 464 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZNF730Q6ZMV8 503 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 WDR88Q6ZMY6 472 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZNF620Q6ZNG0 422 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SLC35D2Q76EJ3 337 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 KCTD9Q7L273 389 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PRSS45Q7RTY3 260 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PID1Q7Z2X4 250 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 NUFIP2Q7Z417 695 aaKnown RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 C6orf120Q7Z4R8 191 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 GOLGA7Q7Z5G4 137 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 C5orf24Q7Z6I8 188 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 VTCN1Q7Z7D3 282 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CBWD2Q8IUF1 395 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 H1FOOQ8IZA3 346 aaPredicted RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR6V1Q8N148 313 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 GABRG1Q8N1C3 465 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HIST3H2BBQ8N257 126 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 FBXO39Q8N4B4 442 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 BPIFB2Q8N4F0 458 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 JAGN1Q8N5M9 183 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 COMMD1Q8N668 190 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZBTB2Q8N680 514 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZNF614Q8N883 585 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TMEM161BQ8NDZ6 487 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SDR9C7Q8NEX9 313 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ATP6V1C2Q8NEY4 427 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PROKR2Q8NFJ6 384 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR7G2Q8NG99 324 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR10AD1Q8NGE0 317 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR51D1Q8NGF3 324 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR10W1Q8NGF6 305 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR1J4Q8NGS1 313 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR4S2Q8NH73 311 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 OR14L1PQ8NHC6 308 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 RPLP0P6Q8NHW5 317 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 FAM110BQ8TC76 370 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 GNPDA2Q8TDQ7 276 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CXorf40AQ8TE69 158 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TBCKQ8TEA7 893 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 LRRC15Q8TF66 581 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ABHD3Q8WU67 409 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SMAP2Q8WU79 429 aaPredicted RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 CCDC107Q8WV48 283 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TMEM170AQ8WVE7 144 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HPSE2Q8WWQ2 592 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TMEM234Q8WY98 164 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 HSD17B8Q92506 261 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 RND1Q92730 232 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PNPLA2Q96AD5 504 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 ZNF707Q96C28 371 aaPredicted RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 ULK4Q96C45 1275 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 DNAJC19Q96DA6 116 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 SAT2Q96F10 170 aaPredicted RBP2.18□□□□□ -2.06
SKA3-207ENST00000536239 GALNT14Q96FL9 552 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 PPP1R16AQ96I34 528 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 CCDC115Q96NT0 180 aa2.18□□□□□ -2.06
SKA3-207ENST00000536239 TECTBQ96PL2 329 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms