RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CPLX4Q7Z7G2 160 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 BCL6BQ8N143 479 aaPredicted RBP12.35□□□□□ -0.43
VPS28-215ENST00000531924 PARP8Q8N3A8 854 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 SDR9C7Q8NEX9 313 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 PROKR2Q8NFJ6 384 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 OR52L1Q8NGH7 329 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 GNPDA2Q8TDQ7 276 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 RAB40AQ8WXH6 277 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 SLCO4A1Q96BD0 722 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 TMEM246Q9BRR3 403 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 C1QTNF5Q9BXJ0 243 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 MYLK2Q9H1R3 596 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 CLN8Q9UBY8 286 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 PCDHGB1Q9Y5G3 927 aa12.35□□□□□ -0.43
VPS28-215ENST00000531924 ACSM4P0C7M7 580 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 EGR1P18146 543 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 RRM2P31350 389 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 GGT2P36268 569 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 PRSS12P56730 875 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 GK2Q14410 553 aaPredicted RBP12.34□□□□□ -0.43
VPS28-215ENST00000531924 OR8G1Q15617 311 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 ZNF181Q2M3W8 571 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 CLEC12AQ5QGZ9 265 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 SHISA2Q6UWI4 295 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 ZBTB46Q86UZ6 589 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 ERGIC1Q969X5 290 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 FUZQ9BT04 418 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 FN3KQ9H479 309 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 KIF17Q9P2E2 1029 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 CYB5R1Q9UHQ9 305 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 KCNG2Q9UJ96 466 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 TANC2Q9HCD6 1990 aa12.34□□□□□ -0.43
VPS28-215ENST00000531924 IGHV2-70DA0A0C4DH43 119 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 OR6C68A6NDL8 312 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 GGT3PA6NGU5 568 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 PPIAL4GP0DN37 164 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 IGHV4-38-2P0DP08 117 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 HSD17B1P14061 328 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 MSX2P35548 267 aaPredicted RBP12.33□□□□□ -0.44
VPS28-215ENST00000531924 MXRA7P84157 204 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS28-215ENST00000531924 TSPAN31Q12999 210 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 TAF13Q15543 124 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 KCNJ8Q15842 424 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 ZNF404Q494X3 552 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 RPL13AP3Q6NVV1 102 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 COLCA1Q6ZS62 124 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 CELF2-AS1Q8N7Q2 184 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 BOLLQ8N9W6 283 aaKnown RBP12.33□□□□□ -0.44
VPS28-215ENST00000531924 OR2T4Q8NH00 348 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 ZDHHC16Q969W1 377 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 CDRT15Q96T59 188 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 NUDT16L1Q9BRJ7 211 aaKnown RBP12.33□□□□□ -0.44
VPS28-215ENST00000531924 ZNF747Q9BV97 191 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 SLC22A4Q9H015 551 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 MMADHCQ9H3L0 296 aaPredicted RBP12.33□□□□□ -0.44
VPS28-215ENST00000531924 FN3KRPQ9HA64 309 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 UFSP2Q9NUQ7 469 aa12.33□□□□□ -0.44
VPS28-215ENST00000531924 KIR2DS1A0A191URI9 304 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 M0R135 149 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 ARPC2O15144 300 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 KRT36O76013 467 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 FSTL3O95633 263 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 RNASE1P07998 156 aaKnown RBP12.32□□□□□ -0.44
VPS28-215ENST00000531924 CA6P23280 308 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 GATA4P43694 442 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 GSSP48637 474 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 DBPQ10586 325 aaPredicted RBP12.32□□□□□ -0.44
VPS28-215ENST00000531924 RSPO1Q2MKA7 263 aaPredicted RBP12.32□□□□□ -0.44
VPS28-215ENST00000531924 KRTAP27-1Q3LI81 207 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 FAM201AQ5SY85 155 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 ZNF620Q6ZNG0 422 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 DCDC5Q6ZRR9 648 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 NAA40Q86UY6 237 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 ZDHHC21Q8IVQ6 265 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 PGAM4Q8N0Y7 254 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 OR4C15Q8NGM1 316 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 UPRTQ96BW1 309 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 ZNF799Q96GE5 643 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 TECTBQ96PL2 329 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 IL1RAPQ9NPH3 570 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 NDE1Q9NXR1 346 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 N6AMT1Q9Y5N5 214 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 ARHGAP32A7KAX9 2087 aa12.32□□□□□ -0.44
VPS28-215ENST00000531924 TRAV40A0A0B4J280 105 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 CD300LBA8K4G0 201 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 TNFRSF11BO00300 401 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 PHYHO14832 338 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 FAM20BO75063 409 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 SEMG1P04279 462 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 PYCR1P32322 319 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 PMELP40967 661 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 CD200P41217 278 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 IL13RA1P78552 427 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 MZT1Q08AG7 82 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 MAB21L1Q13394 359 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 SLC9A3R2Q15599 337 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 OR8B8Q15620 311 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 PRAMEF6Q5VXH4 476 aa12.31□□□□□ -0.44
VPS28-215ENST00000531924 CD276Q5ZPR3 534 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms