RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LUZP2Q86TE4 346 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 SMURF1Q9HCE7 757 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 FAM215AQ9Y5M1 114 aa18.52■□□□□ 0.56
VPS28-212ENST00000530836 FASNP49327 2511 aaKnown RBP18.52■□□□□ 0.55
VPS28-212ENST00000530836 LOC107986453A0A1B0GWG9 222 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 A0A1W2PPK0 400 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 OR6C6A6NF89 314 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 ANKRD61A6NGH8 418 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 PIN1P1O15428 100 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 TTRP02766 147 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 MMP7P09237 267 aaPredicted RBP18.52■□□□□ 0.55
VPS28-212ENST00000530836 ZNF12P17014 697 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 ARR3P36575 388 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 TPTEP56180 551 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 PER3P56645 1201 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 GALK2Q01415 458 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 C1orf185Q5T7R7 199 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 DRAM2Q6UX65 266 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 GCNT2Q8N0V5 402 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 ASB5Q8WWX0 329 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 NANOS1Q8WY41 292 aaKnown RBP18.52■□□□□ 0.55
VPS28-212ENST00000530836 DMRTA2Q96SC8 542 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 SLC24A3Q9HC58 644 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 BRD7Q9NPI1 651 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 CKLFQ9UBR5 152 aa18.52■□□□□ 0.55
VPS28-212ENST00000530836 ERRFI1Q9UJM3 462 aaPredicted RBP18.52■□□□□ 0.55
VPS28-212ENST00000530836 NOTOA8MTQ0 251 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 M0R135 149 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 CRYGSP22914 178 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 TIMP3P35625 211 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 KIR2DL2P43627 348 aaPredicted RBP18.51■□□□□ 0.55
VPS28-212ENST00000530836 SOX2P48431 317 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 PSG4Q00888 419 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 Q6ZT83 130 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 CCDC36Q8IYA8 594 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 RPRMLQ8N4K4 120 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 CCDC54Q8NEL0 328 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 OR52H1Q8NGJ2 320 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 OR51A4Q8NGJ6 313 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 OR10AC1Q8NH08 325 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 PPP1R14AQ96A00 147 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 ZNF799Q96GE5 643 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 ZCCHC4Q9H5U6 513 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 RNF121Q9H920 327 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 AKIP1Q9NQ31 210 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 SLC17A5Q9NRA2 495 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 PLSCR4Q9NRQ2 329 aa18.51■□□□□ 0.55
VPS28-212ENST00000530836 NCOA6Q14686 2063 aaPredicted RBP18.5■□□□□ 0.55
VPS28-212ENST00000530836 F5H5K5 113 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 ANXA2P07355 339 aaKnown RBP18.5■□□□□ 0.55
VPS28-212ENST00000530836 ACSM4P0C7M7 580 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 COX5BP10606 129 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 KRTAP27-1Q3LI81 207 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 DDI2Q5TDH0 399 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 TMEM211Q6ICI0 200 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 ZNF774Q6NX45 483 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 SFXN4Q6P4A7 337 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 CNEP1R1Q8N9A8 125 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 OR1K1Q8NGR3 316 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 OR13C3Q8NGS6 347 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 CEP19Q96LK0 163 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 WNT5BQ9H1J7 359 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 PLGRKTQ9HBL7 147 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 FOXJ3Q9UPW0 622 aa18.5■□□□□ 0.55
VPS28-212ENST00000530836 HIVEP3Q5T1R4 2406 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 A0A0U1RQV5 110 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 A0A1B0GVI7 797 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 RGS5O15539 181 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 SYT7O43581 403 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 UBL3O95164 117 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 FSTP19883 344 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 ZNF45Q02386 682 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 SRSF1Q07955 248 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS28-212ENST00000530836 DCTN2Q13561 401 aaKnown RBP18.49■□□□□ 0.55
VPS28-212ENST00000530836 TMEM53Q6P2H8 277 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 MTFR2Q6P444 385 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 PRSS45Q7RTY3 260 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 OR8B12Q8NGG6 310 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 BORCS5Q969J3 196 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 PGAM5Q96HS1 289 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 WDFY2Q96P53 400 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 MRI1Q9BV20 369 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 CMAHPQ9Y471 501 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 CLEC18AA5D8T8 446 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 P2RY10O00398 339 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 IL18BPO95998 194 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 IL2RAP01589 272 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 ITGA5P08648 1049 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 GLI4P10075 376 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 HOXB1P14653 301 aaPredicted RBP18.49■□□□□ 0.55
VPS28-212ENST00000530836 CCL1P22362 96 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 ETV6P41212 452 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 HTR5AP47898 357 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 SLC6A9P48067 706 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 CAV3P56539 151 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 PMPCAQ10713 525 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 RSPO1Q2MKA7 263 aaPredicted RBP18.49■□□□□ 0.55
VPS28-212ENST00000530836 C9orf135Q5VTT2 229 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 CLEC18BQ6UXF7 455 aa18.49■□□□□ 0.55
VPS28-212ENST00000530836 STAC2Q6ZMT1 411 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms