RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 IFNL4K9M1U5 179 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 ACOT8O14734 319 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 GYPBP06028 91 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 SPARCP09486 303 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 SBK2P0C263 348 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 HOXB6P17509 224 aaKnown RBP11.23□□□□□ -0.61
VPS28-211ENST00000530790 FMO3P31513 532 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 RPS27P42677 84 aaKnown RBP11.23□□□□□ -0.61
VPS28-211ENST00000530790 ENTPD1P49961 510 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 SLC25A1P53007 311 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 GK2Q14410 553 aaPredicted RBP11.23□□□□□ -0.61
VPS28-211ENST00000530790 RSPO1Q2MKA7 263 aaPredicted RBP11.23□□□□□ -0.61
VPS28-211ENST00000530790 TMEM155Q4W5P6 130 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 PGAP1Q75T13 922 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 MRPL21Q7Z2W9 205 aaKnown RBP11.23□□□□□ -0.61
VPS28-211ENST00000530790 AQP12AQ8IXF9 295 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 KLHL36Q8N4N3 616 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 OR6K6Q8NGW6 343 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 BCAS4Q8TDM0 211 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 GIPC3Q8TF64 312 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 MEGF10Q96KG7 1140 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 SIGLEC11Q96RL6 698 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 DDOQ99489 341 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 NIPSNAP1Q9BPW8 284 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 SLC30A2Q9BRI3 323 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 COPS4Q9BT78 406 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 C19orf24Q9BVV8 132 aa11.23□□□□□ -0.61
VPS28-211ENST00000530790 GNGT2O14610 69 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 GYG2O15488 501 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 MLNRO43193 412 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 FOXH1O75593 365 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 SPI1P17947 270 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 GATA3P23771 443 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 MDH2P40926 338 aaKnown RBP11.22□□□□□ -0.61
VPS28-211ENST00000530790 BLVRAP53004 296 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 PRSS12P56730 875 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 LCN2P80188 198 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 FLOT2Q14254 428 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 ZMYND11Q15326 602 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 ZNF362Q5T0B9 420 aaPredicted RBP11.22□□□□□ -0.61
VPS28-211ENST00000530790 CD300LDQ6UXZ3 194 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 DCXRQ7Z4W1 244 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 MUC20Q8N307 709 aaPredicted RBP11.22□□□□□ -0.61
VPS28-211ENST00000530790 OR10S1Q8NGN2 331 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 CANT1Q8WVQ1 401 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 SPRYD4Q8WW59 207 aaPredicted RBP11.22□□□□□ -0.61
VPS28-211ENST00000530790 ZNRF4Q8WWF5 429 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 FEVQ99581 238 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 NMNAT2Q9BZQ4 307 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 OCEL1Q9H607 264 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 GCM1Q9NP62 436 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 CMC2Q9NRP2 79 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 TMEM100Q9NV29 134 aa11.22□□□□□ -0.61
VPS28-211ENST00000530790 LOC105371242A0A075B767 164 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 LRRC30A6NM36 301 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 ZNF878C9JN71 531 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 F5H5P2 479 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 H0YL77 283 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 TMEM178BH3BS89 294 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 E2F6O75461 281 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 CLUP10909 449 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 PSKH1P11801 424 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 EPHA1P21709 976 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 PAICSP22234 425 aaKnown RBP11.21□□□□□ -0.61
VPS28-211ENST00000530790 GRK5P34947 590 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 RBMXP38159 391 aaKnown RBP11.21□□□□□ -0.61
VPS28-211ENST00000530790 RAD23AP54725 363 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 TAF13Q15543 124 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 DRAM2Q6UX65 266 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 NAA40Q86UY6 237 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 SPATA24Q86W54 205 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 IQCF1Q8N6M8 205 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 ZNF511Q8NB15 262 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 SLCO4A1Q96BD0 722 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 SLAMF6Q96DU3 332 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 TMPRSS13Q9BYE2 586 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 YY1AP1Q9H869 796 aa11.21□□□□□ -0.61
VPS28-211ENST00000530790 PATZ1Q9HBE1 687 aaKnown RBP11.21□□□□□ -0.61
VPS28-211ENST00000530790 NOP16Q9Y3C1 178 aaKnown RBP11.21□□□□□ -0.61
VPS28-211ENST00000530790 IGHV3-64DA0A0J9YX35 117 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 ZNF593O00488 134 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 OTX1P32242 354 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 PCK2Q16822 640 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 SNAI3Q3KNW1 292 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 ESCO2Q56NI9 601 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 C1orf229Q6ZS94 237 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 C1QL2Q7Z5L3 287 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 MOGAT3Q86VF5 341 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 LRRC28Q86X40 367 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 C1orf87Q8N0U7 546 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 ZNF420Q8TAQ5 688 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 ZNF418Q8TF45 676 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 OTULINQ96BN8 352 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 ADAT1Q9BUB4 502 aaKnown RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 C7orf69Q9H7B7 122 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 ZNF556Q9HAH1 456 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 CENPMQ9NSP4 180 aa11.2□□□□□ -0.62
VPS28-211ENST00000530790 PDP1Q9P0J1 537 aaPredicted RBP11.2□□□□□ -0.62
VPS28-211ENST00000530790 PPIAL4EA0A075B759 164 aa11.19□□□□□ -0.62
VPS28-211ENST00000530790 A0A0A6YYJ9 748 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms