RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 RHNO1Q9BSD3 238 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 RNF121Q9H920 327 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 EMC7Q9NPA0 242 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ACOT13Q9NPJ3 140 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 SLC17A5Q9NRA2 495 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 DDX28Q9NUL7 540 aaKnown RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 ZNF224Q9NZL3 707 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 ASH2LQ9UBL3 628 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 CLEC2DQ9UHP7 191 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 FBXL3Q9UKT7 428 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 AMDHD2Q9Y303 409 aa6.44□□□□□ -1.38
CD44-228ENST00000528455 HEATR1Q9H583 2144 aaKnown RBP6.44□□□□□ -1.38
CD44-228ENST00000528455 LRBAP50851 2863 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 HCFC1P51610 2035 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 EEF1E1-BLOC1S5C9J1V9 151 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 RER1O15258 196 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 EEF1E1O43324 174 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 SGCEO43556 437 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 CLDN14O95500 239 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 MT-ND2P03891 347 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 MT-ND5P03915 603 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 SERPINA5P05154 406 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 KRT8P05787 483 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ADRA2AP08913 450 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ZNF32P17041 273 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 NAT1P18440 290 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 PCMT1P22061 227 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 IL32P24001 234 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 OTX1P32242 354 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 UGT2B10P36537 528 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 PEX19P40855 299 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 GBX2P52951 348 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 NR1H2P55055 460 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 CDH15P55291 814 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 WNT4P56705 351 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 UBE2NP61088 152 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 SRSF3P84103 164 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 BDH1Q02338 343 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 TBCEQ15813 527 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 GSG1Q2KHT4 349 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 RSPO1Q2MKA7 263 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 TBRG1Q3YBR2 411 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 CCDC92Q53HC0 331 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 SYT6Q5T7P8 510 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 C9orf135Q5VTT2 229 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 UBE2UQ5VVX9 321 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 CORO6Q6QEF8 472 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 KLHL24Q6TFL4 600 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 NCCRP1Q6ZVX7 275 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 KCTD8Q6ZWB6 473 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 WDR31Q8NA23 367 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 OR52N5Q8NH56 324 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 FGFBP3Q8TAT2 258 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 SMAP2Q8WU79 429 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 ITLN2Q8WWU7 325 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 SGCDQ92629 289 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 RNASE6Q93091 150 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 ITFG2Q969R8 447 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 COG8Q96MW5 612 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ZNF75AQ96N20 296 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 KCNJ15Q99712 375 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 COQ7Q99807 217 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ALG8Q9BVK2 526 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 MND1Q9BWT6 205 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 MRPS26Q9BYN8 205 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 OR2H1Q9GZK4 316 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 HDHD2Q9H0R4 259 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 SP140LQ9H930 580 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ELOVL3Q9HB03 270 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 VCX3AQ9NNX9 186 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 PNRC2Q9NPJ4 139 aaKnown RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 CENPMQ9NSP4 180 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 SLCO1C1Q9NYB5 712 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 PLEK2Q9NYT0 353 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 CRNNQ9UBG3 495 aaPredicted RBP6.43□□□□□ -1.38
CD44-228ENST00000528455 NDRG3Q9UGV2 375 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 ATPIF1Q9UII2 106 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 SCOCQ9UIL1 159 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 COPS3Q9UNS2 423 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 RTTNQ86VV8 2226 aa6.43□□□□□ -1.38
CD44-228ENST00000528455 IQCMA0A1B0GVH7 501 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OR6C6A6NF89 314 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 ZNF878C9JN71 531 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 J3QLW9 94 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 MYL12BO14950 172 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 OGG1O15527 345 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 PLPP2O43688 288 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 SYNGR3O43761 229 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 RAD51DO75771 328 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 SEC14L2O76054 403 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 APOL3O95236 402 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 IGKV3-15P01624 115 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 HLA-HP01893 362 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 TFAP2AP05549 437 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CD1AP06126 327 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 H2BFMP0C1H6 154 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 PATE4P0C8F1 98 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CD79AP11912 226 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 ZNF19P17023 458 aa6.42□□□□□ -1.38
CD44-228ENST00000528455 CD53P19397 219 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms