RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 DBTP11182 482 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 HIST1H1CP16403 213 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 RAB4AP20338 218 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 PCMT1P22061 227 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 DPP4P27487 766 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SHC1P29353 583 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 C21orf33P30042 268 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 GRPRP30550 384 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SLC6A6P31641 620 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SFTPDP35247 375 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RFC3P40938 356 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SLC15A1P46059 708 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CYB561P49447 251 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CEBPDP49716 269 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 NPY4RP50391 375 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SELENOVP59797 346 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RAB4BP61018 213 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 LCN6P62502 163 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RPS4XP62701 263 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 CFHR3Q02985 330 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ZNF91Q05481 1191 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RPL18Q07020 188 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 ST3GAL4Q11206 333 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SNTA1Q13424 505 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR7A5Q15622 319 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 USF2Q15853 346 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 KLHL12Q53G59 568 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ABHD17BQ5VST6 288 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 C1orf140Q5VVS0 124 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 XAF1Q6GPH4 301 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RPL13AP3Q6NVV1 102 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FAM122CQ6P4D5 195 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 PAQR6Q6TCH4 344 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 RTL4Q6ZR62 310 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SHFQ7M4L6 423 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 GPR141Q7Z602 305 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 PLCZ1Q86YW0 608 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ELMOD2Q8IZ81 293 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 GALNT16Q8N428 558 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 LNX2Q8N448 690 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 STX19Q8N4C7 294 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ASCC1Q8N9N2 400 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 LRRC75AQ8NAA5 344 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FAM98AQ8NCA5 519 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 ZNF680Q8NEM1 530 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SDR9C7Q8NEX9 313 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 BPIFCQ8NFQ6 507 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR2T33Q8NG76 320 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR52E2Q8NGJ4 325 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR52I1Q8NGK6 324 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR9Q1Q8NGQ5 310 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR1J4Q8NGS1 313 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR4K13Q8NH42 304 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 LRRC20Q8TCA0 184 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ZPLD1Q8TCW7 415 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CD300LFQ8TDQ1 290 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 PAQR8Q8TEZ7 354 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FAR1Q8WVX9 515 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 TRUB1Q8WWH5 349 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 TMEM234Q8WY98 164 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SMPDL3BQ92485 455 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FGF11Q92914 225 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 LGALS12Q96DT0 336 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SAT2Q96F10 170 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 LRR1Q96L50 414 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 Q96M85 177 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 IP6K3Q96PC2 410 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ERMAPQ96PL5 475 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 SIGLEC12Q96PQ1 595 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FYTTD1Q96QD9 318 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 SIGLEC11Q96RL6 698 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CCNL2Q96S94 520 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 SRSF8Q9BRL6 282 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 THAP7Q9BT49 309 aaPredicted RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 KATNB1Q9BVA0 655 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SF3B5Q9BWJ5 86 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 HCAR1Q9BXC0 346 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 ANGPTL4Q9BY76 406 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SLC19A3Q9BZV2 496 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 NAA50Q9GZZ1 169 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 LHPPQ9H008 270 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 OR51V1Q9H2C8 321 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FKRPQ9H9S5 495 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CPNE5Q9HCH3 593 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CCNB1IP1Q9NPC3 277 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.69□□□□□ -1.82
CD44-226ENST00000527889 NANSQ9NR45 359 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 DEPPQ9NTK1 212 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 PLCXD1Q9NUJ7 323 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 STMN3Q9NZ72 180 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 FBXL17Q9UF56 701 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 CHRNA9Q9UGM1 479 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 DKKL1Q9UK85 242 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 SPATA2Q9UM82 520 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 MRPS7Q9Y2R9 242 aaKnown RBP3.69□□□□□ -1.82
CD44-226ENST00000527889 KCNK7Q9Y2U2 307 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 HCFC1P51610 2035 aa3.69□□□□□ -1.82
CD44-226ENST00000527889 LOC105371267A0A1B0GV96 52 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 OR2M5A3KFT3 312 aa3.68□□□□□ -1.82
CD44-226ENST00000527889 OR6C68A6NDL8 312 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms