RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 A0A075B6Q4 140 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 ZNF503-AS2A6NEH8 195 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 PDCD5O14737 125 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 SYT7O43581 403 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 HOXB1P14653 301 aaPredicted RBP18.33■□□□□ 0.52
VPS28-208ENST00000527797 RAB3BP20337 219 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 CAV3P56539 151 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 PLP2Q04941 152 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 GABRA6Q16445 453 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 GSG1Q2KHT4 349 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 SFRP5Q5T4F7 317 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 LINC00299Q6ZSB3 139 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 C1orf162Q8NEQ5 155 aaPredicted RBP18.33■□□□□ 0.52
VPS28-208ENST00000527797 ORAI1Q96D31 301 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 ZNF319Q9P2F9 582 aa18.33■□□□□ 0.52
VPS28-208ENST00000527797 CRNNQ9UBG3 495 aaPredicted RBP18.33■□□□□ 0.52
VPS28-208ENST00000527797 PLEKHB1Q9UF11 243 aaPredicted RBP18.33■□□□□ 0.52
VPS28-208ENST00000527797 LAMA5O15230 3695 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 TBX1O43435 398 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 NCR1O76036 304 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 UBE2NP61088 152 aaKnown RBP18.32■□□□□ 0.52
VPS28-208ENST00000527797 P2RY6Q15077 328 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 COMMD2Q86X83 199 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 CROCCP3Q8IVE0 287 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 OR6Q1Q8NGQ2 317 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 AP3S1Q92572 193 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 BOD1Q96IK1 185 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 OR10A2Q9H208 303 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 NOX3Q9HBY0 568 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 B3GNT2Q9NY97 397 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 SH3BGRL2Q9UJC5 107 aa18.32■□□□□ 0.52
VPS28-208ENST00000527797 IQCMA0A1B0GVH7 501 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 OPRM1P35372 400 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 ST6GALNAC3Q8NDV1 305 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 OR52H1Q8NGJ2 320 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 GTF3C1Q12789 2109 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 A0A0U1RQV5 110 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 A0A1B0GTI1 187 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 PAX7P23759 505 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 APEX1P27695 318 aaKnown RBP18.31■□□□□ 0.52
VPS28-208ENST00000527797 HOXC12P31275 282 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 BMXP51813 675 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 CASP6P55212 293 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 MOGQ16653 247 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 STAC2Q6ZMT1 411 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 DOK3Q7L591 496 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 NR2C2APQ86WQ0 139 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 CXorf67Q86X51 503 aaPredicted RBP18.31■□□□□ 0.52
VPS28-208ENST00000527797 GPR84Q9NQS5 396 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 ZNF275Q9NSD4 429 aaPredicted RBP18.31■□□□□ 0.52
VPS28-208ENST00000527797 PEX16Q9Y5Y5 336 aa18.31■□□□□ 0.52
VPS28-208ENST00000527797 DOCK7Q96N67 2140 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 FREM1Q5H8C1 2179 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 ARHGAP21Q5T5U3 1957 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 LCATP04180 440 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 CCL1P22362 96 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 ANOS1P23352 680 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 CFL1P23528 166 aaKnown RBP18.3■□□□□ 0.52
VPS28-208ENST00000527797 STOMP27105 288 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 S100A5P33763 92 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 HGFACQ04756 655 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 GFOD2Q3B7J2 385 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 MDP1Q86V88 176 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 PIGMQ9H3S5 423 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 SMURF1Q9HCE7 757 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 CKLFQ9UBR5 152 aa18.3■□□□□ 0.52
VPS28-208ENST00000527797 AK6Q9Y3D8 172 aaKnown RBP18.3■□□□□ 0.52
VPS28-208ENST00000527797 NCOA6Q14686 2063 aaPredicted RBP18.3■□□□□ 0.52
VPS28-208ENST00000527797 CHD8Q9HCK8 2581 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 LOC100509620A0A075B734 347 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 A0A0G2JNJ9 132 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 C5orf63A6NC05 138 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 ANKRD61A6NGH8 418 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 NOTOA8MTQ0 251 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 E9PLN8 166 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 ZNF12P17014 697 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 PEX19P40855 299 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 OR10A3P58181 314 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 TSC22D1Q15714 1073 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 CEP78Q5JTW2 689 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 SFXN4Q6P4A7 337 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 PCSK4Q6UW60 755 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 C17orf78Q8N4C9 275 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 WBP1Q96G27 269 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 FAM71F1Q96KD3 344 aaPredicted RBP18.29■□□□□ 0.52
VPS28-208ENST00000527797 Q9UFV3 132 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 FOXJ3Q9UPW0 622 aa18.29■□□□□ 0.52
VPS28-208ENST00000527797 TRAV8-7A0A075B6U6 113 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 A0A0G2JK05 382 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 IGLV3-1P01715 115 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 SNAI3Q3KNW1 292 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 IDNKQ5T6J7 187 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 TMEM211Q6ICI0 200 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 ZNF474Q6S9Z5 364 aaPredicted RBP18.28■□□□□ 0.52
VPS28-208ENST00000527797 LRRTM1Q86UE6 522 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 CCDC54Q8NEL0 328 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 FGGYQ96C11 551 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 ZNF629Q9UEG4 869 aaPredicted RBP18.28■□□□□ 0.52
VPS28-208ENST00000527797 SVILO95425 2214 aa18.28■□□□□ 0.52
VPS28-208ENST00000527797 PIEZO2Q9H5I5 2752 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms