RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 SLC17A7Q9P2U7 560 aa2.09□□□□□ -2.07
CD44-215ENST00000525241 A6NDN8 102 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 PDZK1P1A8MUH7 402 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 NDUFC2-KCTD14E9PQ53 114 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 AP3B1O00203 1094 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 OR2F2O95006 317 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 IGKV4-1P06312 121 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 CSNK2A2P19784 350 aaPredicted RBP2.08□□□□□ -2.08
CD44-215ENST00000525241 BCKDHBP21953 392 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 IL32P24001 234 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 POLR2IP36954 125 aaKnown RBP2.08□□□□□ -2.08
CD44-215ENST00000525241 LIPEQ05469 1076 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 NCF4Q15080 339 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 RBMY1FQ15415 496 aaKnown RBP2.08□□□□□ -2.08
CD44-215ENST00000525241 HSDL1Q3SXM5 330 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 TPTE2P1Q5T6R2 138 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 CARD17Q5XLA6 110 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 GUSBP11Q6P575 273 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 TTC23LQ6PF05 361 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 ZNF101Q8IZC7 436 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 SLC35G3Q8N808 338 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 APCDD1LQ8NCL9 501 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 OR6Q1Q8NGQ2 317 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 OR51E1Q8TCB6 317 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 PLIN2Q99541 437 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 TMEM38AQ9H6F2 299 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 C21orf62Q9NYP8 219 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 PCDH11XQ9BZA7 1347 aa2.08□□□□□ -2.08
CD44-215ENST00000525241 VGLL3A8MV65 326 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 BTNL10A8MVZ5 291 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 POLR1CO15160 346 aaPredicted RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 EIF1BO60739 113 aaKnown RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 HUS1O60921 280 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 PAHP00439 452 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 CALRP27797 417 aaKnown RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 EIF1P41567 113 aaKnown RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 PRLHRP49683 370 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 HMGN5P82970 282 aaKnown RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 CYP24A1Q07973 514 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 SIGLEC14Q08ET2 396 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 FUT5Q11128 374 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 YIF1BQ5BJH7 314 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 SCD5Q86SK9 330 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 SNX31Q8N9S9 440 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 OR9G4Q8NGQ1 327 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 TMEM243Q9BU79 118 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 ACTR3CQ9C0K3 210 aaPredicted RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 ZNF160Q9HCG1 818 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 MYOZ1Q9NP98 299 aaPredicted RBP2.07□□□□□ -2.08
CD44-215ENST00000525241 AGPAT4Q9NRZ5 378 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 NINLQ9Y2I6 1382 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 SCN1AP35498 2009 aa2.07□□□□□ -2.08
CD44-215ENST00000525241 TMEM120BA0PK00 339 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 ZNF98A6NK75 572 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 SYCE1LA8MT33 242 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 TNFRSF11BO00300 401 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 SLC9A3R1O14745 358 aaPredicted RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 NMT2O60551 498 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 LSM8O95777 96 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 CD160O95971 181 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 CYB5R3P00387 301 aaPredicted RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 GTF2E2P29084 291 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 MRPL19P49406 292 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 ZNF121P58317 390 aaPredicted RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 PPIDQ08752 370 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 ART3Q13508 389 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 PNOCQ13519 176 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 CCDC183Q5T5S1 534 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 BRD3OSQ6XYD6 125 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 ZNF645Q8N7E2 425 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 OR5T1Q8NG75 326 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 OR4M1Q8NGD0 313 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 NRGNQ92686 78 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 C8orf44Q96CB5 159 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 IP6K3Q96PC2 410 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 SLIRPQ9GZT3 109 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 ZSCAN16Q9H4T2 348 aaPredicted RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 TMEM185BQ9H7F4 350 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 BEX1Q9HBH7 125 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 NEK6Q9HC98 313 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 NMRK1Q9NWW6 199 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 RHBDL2Q9NX52 303 aa2.06□□□□□ -2.08
CD44-215ENST00000525241 PDP1Q9P0J1 537 aaPredicted RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 DHCR7Q9UBM7 475 aaKnown RBP2.06□□□□□ -2.08
CD44-215ENST00000525241 IGKV1-27A0A075B6S5 117 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 IGHV3-49A0A0A0MS15 119 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 IGHV3OR16-9A0A0B4J2B5 98 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 H7C0C1 242 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 KRT14P02533 472 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 EIF2S2P20042 333 aaKnown RBP2.05□□□□□ -2.08
CD44-215ENST00000525241 RAB4AP20338 218 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 USF1P22415 310 aaPredicted RBP2.05□□□□□ -2.08
CD44-215ENST00000525241 COL8A2P25067 703 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 CD34P28906 385 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 BMI1P35226 326 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 TALDO1P37837 337 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 SYKP43405 635 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 ATP5OP48047 213 aa2.05□□□□□ -2.08
CD44-215ENST00000525241 GDI2P50395 445 aaKnown RBP2.05□□□□□ -2.08
CD44-215ENST00000525241 NDUFA8P51970 172 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms