RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 LAX1Q8IWV1 398 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 MSRB3Q8IXL7 192 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 TIGD4Q8IY51 512 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 CCDC36Q8IYA8 594 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 HS3ST5Q8IZT8 346 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 FAM86B1Q8N7N1 296 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 C1orf162Q8NEQ5 155 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-207ENST00000507401 SMAP2Q8WU79 429 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-207ENST00000507401 FBXW5Q969U6 566 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 DACT3Q96B18 629 aaPredicted RBP7.03□□□□□ -1.28
SCN1A-207ENST00000507401 TRMT61AQ96FX7 289 aaKnown RBP7.03□□□□□ -1.28
SCN1A-207ENST00000507401 KCNS3Q9BQ31 491 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 SPATA5L1Q9BVQ7 753 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 TRIM2Q9C040 744 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 DPAGT1Q9H3H5 408 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 TMEM38AQ9H6F2 299 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 SLC25A37Q9NYZ2 338 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 MGAT4AQ9UM21 535 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 MGAT4BQ9UQ53 548 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 LAMP3Q9UQV4 416 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 LSM2Q9Y333 95 aaKnown RBP7.03□□□□□ -1.28
SCN1A-207ENST00000507401 NPTNQ9Y639 398 aa7.03□□□□□ -1.28
SCN1A-207ENST00000507401 MEIKINA0A087WXM9 373 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 A0A0B4J293 547 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 CIB4A0PJX0 185 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 MFSD2BA6NFX1 497 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ANKRD61A6NGH8 418 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 AQP7P3A6NL99 342 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ZAR1LA6NP61 321 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 M0R233 179 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 AKAP8O43823 692 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 OR2T1O43869 369 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 SSX4O60224 188 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 TPST2O60704 377 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 RAMP1O60894 148 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 B3GALNT1O75752 331 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 S100A8P05109 93 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 HSMCR30P0CW71 290 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PNMTP11086 282 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 IFI30P13284 250 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PRG2P13727 222 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 GABRA5P31644 462 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PCGF2P35227 344 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 EVX1P49640 407 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 CDK6Q00534 326 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 TPBGQ13641 420 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 SMN1Q16637 294 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 C1orf140Q5VVS0 124 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 C5orf46Q6UWT4 87 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 TMEM108Q6UXF1 575 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PTCHD4Q6ZW05 846 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 AAED1Q7RTV5 226 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ATG4DQ86TL0 474 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PHC2Q8IXK0 858 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 C17orf78Q8N4C9 275 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 NANOGP1Q8N7R0 232 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 TMEM99Q8N816 258 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ZIC4Q8N9L1 334 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 POMGNT2Q8NAT1 580 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 OR10G2Q8NGC3 310 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 OR9K2Q8NGE7 335 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 OR8J1Q8NGP2 316 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 MFSD8Q8NHS3 518 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 MAL2Q969L2 176 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 C3orf49Q96BT1 292 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PERPQ96FX8 193 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 C7orf34Q96L11 122 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 Q96MF0 132 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF607Q96SK3 696 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 TCEAL7Q9BRU2 100 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 PRRG3Q9BZD7 231 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 GSX1Q9H4S2 264 aaPredicted RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 HEXA-AS1Q9H8Q6 139 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 SLC25A19Q9HC21 320 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 ABCB9Q9NP78 766 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 EXOSC4Q9NPD3 245 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 MRPS18AQ9NVS2 196 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 CISD1Q9NZ45 108 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 UPB1Q9UBR1 384 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 AASSQ9UDR5 926 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 RASD1Q9Y272 281 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 EXOSC1Q9Y3B2 195 aaKnown RBP7.02□□□□□ -1.29
SCN1A-207ENST00000507401 SLC25A15Q9Y619 301 aa7.02□□□□□ -1.29
SCN1A-207ENST00000507401 CADP27708 2225 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 LOC102725191A0A1B0GVB3 256 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 TRDV1A0A1B0GX56 115 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 NUDT19A8MXV4 375 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 SHISA9B4DS77 424 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 FTCDNL1E5RQL4 147 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 H7C2Y5 167 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 FABP7O15540 132 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 AKR7A2O43488 359 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 FZD7O75084 574 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 RAD51DO75771 328 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 RGS11O94810 467 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 AKR7A3O95154 331 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 IGHV3-9P01782 118 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 HLA-DPB1P04440 258 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 HEXAP06865 529 aa7.01□□□□□ -1.29
SCN1A-207ENST00000507401 CBLP22681 906 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms