RNA–Protein interactions for RNA: ENST00000504788.5

LMNB1-208, Transcript of lamin B1, human

TSL 2

Gene LMNB1, Length 1,801 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNB1-208	ENST00000504788	PCDHGB1	Q9Y5G3	927 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	SIRT4	Q9Y6E7	314 aa	Predicted RBP	4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	NAV2	Q8IVL1	2488 aa		4.24	□□□□□ -1.73
LMNB1-208	ENST00000504788	C5orf49	A4QMS7	147 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	OR4C45	A6NMZ5	311 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF254	O75437	659 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	RAB36	O95755	333 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	FADS2	O95864	444 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	PTH	P01270	115 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CCL1	P22362	96 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	THBS4	P35443	961 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	MPV17	P39210	176 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	KIR3DL2	P43630	455 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CAPZA2	P47755	286 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	HTR5A	P47898	357 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	MMP15	P51511	669 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	GTF2A1	P52655	376 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	NR1H2	P55055	460 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF121	P58317	390 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	RPS11	P62280	158 aa	Known RBP eCLIP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACTC1	P68032	377 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACTA1	P68133	377 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TLE4	Q04727	773 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACSM1	Q08AH1	577 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ECH1	Q13011	328 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	PSG7	Q13046	419 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	GK2	Q14410	553 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	OR8B8	Q15620	311 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	EFNB3	Q15768	340 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TP53I3	Q53FA7	332 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	LCE2C	Q5TA81	110 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	OR2G6	Q5TZ20	316 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TMEM53	Q6P2H8	277 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TMEM154	Q6P9G4	183 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	DRAM2	Q6UX65	266 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	FBXW12	Q6X9E4	464 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	AHSA2	Q719I0	299 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	LRP11	Q86VZ4	500 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ALDH16A1	Q8IZ83	802 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF611	Q8N823	705 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	BPIFB6	Q8NFQ5	453 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	KLF14	Q8TD94	323 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	THEM6	Q8WUY1	208 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ASB17	Q8WXJ9	295 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	NRGN	Q92686	78 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SGK3	Q96BR1	496 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	PIK3IP1	Q96FE7	263 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	RADIL	Q96JH8	1075 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	PGLYRP3	Q96LB9	341 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	C4orf45	Q96LM5	186 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	OR5M11	Q96RB7	305 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TBX5	Q99593	518 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ESRP2	Q9H6T0	727 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ELOVL3	Q9HB03	270 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CCNB1IP1	Q9NPC3	277 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	INPP5E	Q9NRR6	644 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	FRRS1L	Q9P0K9	344 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ERVK-18	Q9QC07	812 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	NUFIP1	Q9UHK0	495 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ST6GALNAC2	Q9UJ37	374 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	LAMP5	Q9UJQ1	280 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TMEM14A	Q9Y6G1	99 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	YLPM1	P49750	1951 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ARID1A	O14497	2285 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788		A0A0U1RQV5	110 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	hCG_38984	A0A1B0GV85	526 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788		F5H5K5	113 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	OGG1	O15527	345 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TMCC2	O75069	709 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SC5D	O75845	299 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CLPTM1	O96005	669 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	IGHV3-13	P01766	116 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CRYAA	P02489	173 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	MT-ND2	P03891	347 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	FAM157B	P0CG42	384 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SLC2A1	P11166	492 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ACKR3	P25106	362 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	HOXC12	P31275	282 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TTK	P33981	857 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TGM4	P49221	684 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	PRKX	P51817	358 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	GABARAPL2	P60520	117 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	GRB2	P62993	217 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	CSNK2B	P67870	215 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	ZNF92	Q03936	586 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	EMX1	Q04741	257 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SNTB2	Q13425	540 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	MED21	Q13503	144 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	TBC1D28	Q2M2D7	210 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	KLHL22	Q53GT1	634 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SPRN	Q5BIV9	151 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	WDR38	Q5JTN6	314 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	RBM48	Q5RL73	367 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	MBNL2	Q5VZF2	373 aa	Known RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	DMKN	Q6E0U4	476 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	KRT80	Q6KB66	452 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	KCTD18	Q6PI47	426 aa	Predicted RBP	4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788		Q6ZR03	302 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	DNM1P46	Q6ZS02	220 aa		4.23	□□□□□ -1.73
LMNB1-208	ENST00000504788	SPATC1	Q76KD6	591 aa		4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms