RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 KIAA1958Q8N8K9 716 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 SUMF1Q8NBK3 374 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 PLPP5Q8NEB5 264 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 NUDT9Q9BW91 350 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 ZCCHC4Q9H5U6 513 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 GPR84Q9NQS5 396 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 SLC39A9Q9NUM3 307 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 PUS1Q9Y606 427 aaKnown RBP eCLIP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 MEIKINA0A087WXM9 373 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 TRIM77I1YAP6 450 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 M0R296 226 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 DFFBO76075 338 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 CTXN2P0C2S0 81 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 CLEC2LP0C7M8 214 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 NAT2P11245 290 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 CNR1P21554 472 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 RGS7BPQ6MZT1 257 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 DDOQ99489 341 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 HINT3Q9NQE9 182 aaKnown RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 MYH14Q7Z406 1995 aaKnown RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 IGHV1OR15-9A0A0B4J2B8 117 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 MAGEB4O15481 346 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 RPS19P39019 145 aaKnown RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 B4GALNT1Q00973 533 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 TLE4Q04727 773 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 RNF151Q2KHN1 245 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 FAM209AQ5JX71 171 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 PRAMEF5Q5TYX0 476 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 PRAMEF6Q5VXH4 476 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 TMEM92Q6UXU6 159 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 CMTM2Q8TAZ6 248 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 DIO1P49895 249 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 ADGRG3Q86Y34 549 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 RDH5Q92781 318 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 CNRIP1Q96F85 164 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 A0A0A6YYD5 115 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 ANKRD61A6NGH8 418 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 BHLHE40O14503 412 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 NANOGP1Q8N7R0 232 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 ZNF707Q96C28 371 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-215ENST00000496447 EVPLQ92817 2033 aa11.91□□□□□ -0.5
PTPRF-215ENST00000496447 PPM1DO15297 605 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SCAF4O95104 1147 aaKnown RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 EPHA8P29322 1005 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 GPR12P47775 334 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 C1orf53Q5VUE5 145 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 DTWD2Q8NBA8 298 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SMOC1Q9H4F8 434 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SLC25A37Q9NYZ2 338 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 DHHO43323 396 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ARRB2P32121 409 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 GABRA4P48169 554 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SRP9P49458 86 aaKnown RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 MEOX2P50222 304 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 HABP2Q14520 560 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SOHLH1Q5JUK2 328 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ZDHHC23Q8IYP9 409 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 OR1S2Q8NGQ3 325 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 OR2AE1Q8NHA4 323 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 FAM213BQ8TBF2 198 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 UBE2FQ969M7 185 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 VPS25Q9BRG1 176 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 RNF32Q9H0A6 362 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 TMEM129A0AVI4 362 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 FITM1A5D6W6 292 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 CRYM-AS1A6NIL9 109 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 IGFBP1P08833 259 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 CISD3P0C7P0 127 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 NPBWR1P48145 328 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 CCR9P51686 369 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ZNF626Q68DY1 528 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 FAM109BQ6ICB4 259 aaPredicted RBP11.9□□□□□ -0.5
PTPRF-215ENST00000496447 SKA3Q8IX90 412 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 OR2A14Q96R47 310 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 LINC01387J3KSC0 135 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 YIF1AO95070 293 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ADH4P08319 380 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 AQP6Q13520 282 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ACSM5Q6NUN0 579 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ADAM5Q6NVV9 412 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 IL34Q6ZMJ4 242 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 AKR7LQ8NHP1 331 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 ZDHHC16Q969W1 377 aa11.9□□□□□ -0.5
PTPRF-215ENST00000496447 I6L893 689 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-215ENST00000496447 TGOLN2O43493 480 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 WIPI1Q5MNZ9 446 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-215ENST00000496447 TMPRSS7Q7RTY8 843 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 OR4D10Q8NGI6 311 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 OR1L3Q8NH93 324 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 FBXO17Q96EF6 278 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 DOK1Q99704 481 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 ISYNA1Q9NPH2 558 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 F6UZH7 168 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 HBE1P02100 147 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 COL9A1P20849 921 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 RTL8BQ17RB0 113 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 ALKBH6Q3KRA9 238 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 Q3ZCU0 254 aa11.89□□□□□ -0.51
PTPRF-215ENST00000496447 CDONQ4KMG0 1287 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms