RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 IGHV2-70DA0A0C4DH43 119 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 FAM107AO95990 144 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 SEMG1P04279 462 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 ACSM4P0C7M7 580 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 CD80P33681 288 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 IFNGR2P38484 337 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 PRSS12P56730 875 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 TRAP1Q12931 704 aaKnown RBP16.54■□□□□ 0.24
COL9A3-210ENST00000472880 ZNF404Q494X3 552 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 COLCA1Q6ZS62 124 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 SDR9C7Q8NEX9 313 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 ZNF48Q96MX3 618 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-210ENST00000472880 TMEM246Q9BRR3 403 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 FN3KQ9H479 309 aa16.54■□□□□ 0.24
COL9A3-210ENST00000472880 IGHV3OR16-10A0A075B7F0 116 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 FSTL3O95633 263 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 LCATP04180 440 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 HLA-DPB1P04440 258 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 PPIAL4GP0DN37 164 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 MTNR1AP48039 350 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 PITPNBP48739 271 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 PAX2Q02962 417 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 DBPQ10586 325 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-210ENST00000472880 GK2Q14410 553 aaPredicted RBP16.53■□□□□ 0.24
COL9A3-210ENST00000472880 KRTAP27-1Q3LI81 207 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 ZBTB46Q86UZ6 589 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 PGAM4Q8N0Y7 254 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 OR11L1Q8NGX0 322 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 RAB40AQ8WXH6 277 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 SLC25A28Q96A46 364 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 ZNF747Q9BV97 191 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 TMCC3Q9ULS5 477 aa16.53■□□□□ 0.24
COL9A3-210ENST00000472880 TRAV40A0A0B4J280 105 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 A0A1B0GWJ7 208 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 IDH3BO43837 385 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 FABP3P05413 133 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 RNASE1P07998 156 aaKnown RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 IGHV4-38-2P0DP08 117 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 RRM2P31350 389 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 GATA4P43694 442 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 TPTEP56180 551 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 RSPO1Q2MKA7 263 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 FAM201AQ5SY85 155 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 SHISA2Q6UWI4 295 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 ZNF620Q6ZNG0 422 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 PGAP1Q75T13 922 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 MRPL21Q7Z2W9 205 aaKnown RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 FITM2Q8N6M3 262 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 CELF2-AS1Q8N7Q2 184 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 SPRYD4Q8WW59 207 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 UPRTQ96BW1 309 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 C1orf147Q96MC9 270 aaPredicted RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 NSMCE2Q96MF7 247 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 CLN8Q9UBY8 286 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 CYB5R1Q9UHQ9 305 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 KCNG2Q9UJ96 466 aa16.52■□□□□ 0.24
COL9A3-210ENST00000472880 NOP16Q9Y3C1 178 aaKnown RBP16.52■□□□□ 0.24
COL9A3-210ENST00000472880 OR6C68A6NDL8 312 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 HSD17B1P14061 328 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 ZNF823P16415 610 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 GGT2P36268 569 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 RAD23AP54725 363 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.51■□□□□ 0.23
COL9A3-210ENST00000472880 DCDC5Q6ZRR9 648 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 CCDC197Q8NCU1 140 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 OR52L1Q8NGH7 329 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 GNPDA2Q8TDQ7 276 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 ERGIC1Q969X5 290 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 SLCO4A1Q96BD0 722 aa16.51■□□□□ 0.23
COL9A3-210ENST00000472880 PNRC2Q9NPJ4 139 aaKnown RBP16.51■□□□□ 0.23
COL9A3-210ENST00000472880 CLDN34H7C241 214 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 M0R135 149 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 ARPC2O15144 300 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 PMELP40967 661 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 CD200P41217 278 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 GSSP48637 474 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 TSPAN31Q12999 210 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 MAB21L1Q13394 359 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 OR8G1Q15617 311 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 SAMD4BQ5PRF9 694 aaKnown RBP16.5■□□□□ 0.23
COL9A3-210ENST00000472880 SLC35F1Q5T1Q4 408 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 PRAMEF6Q5VXH4 476 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 C16orf89Q6UX73 402 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 C9orf139Q6ZV77 190 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 NAA40Q86UY6 237 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 Q8TCH9 128 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 SPTSSAQ969W0 71 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 DACT3Q96B18 629 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-210ENST00000472880 ZNF799Q96GE5 643 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 NUDT16L1Q9BRJ7 211 aaKnown RBP16.5■□□□□ 0.23
COL9A3-210ENST00000472880 UFSP2Q9NUQ7 469 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 MRPL22Q9NWU5 206 aaKnown RBP16.5■□□□□ 0.23
COL9A3-210ENST00000472880 NDE1Q9NXR1 346 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 CD300AQ9UGN4 299 aa16.5■□□□□ 0.23
COL9A3-210ENST00000472880 PHYHO14832 338 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 TMPRSS2O15393 492 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 FAM20BO75063 409 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 PLATP00750 562 aa16.49■□□□□ 0.23
COL9A3-210ENST00000472880 MSX2P35548 267 aaPredicted RBP16.49■□□□□ 0.23
COL9A3-210ENST00000472880 MXRA7P84157 204 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms