RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 F5H5P2 479 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 TMEM178BH3BS89 294 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 M0R135 149 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 MLNRO43193 412 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF205O95201 554 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 FAM107AO95990 144 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 CYB5R3P00387 301 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 SELEP16581 610 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 GATA3P23771 443 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC6A9P48067 706 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 SRP9P49458 86 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 TPTEP56180 551 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 SEC61A1P61619 476 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 MALLQ13021 153 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 GK2Q14410 553 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 TMEM155Q4W5P6 130 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 FAM98BQ52LJ0 330 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 LRRC28Q86X40 367 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 OR4Q3Q8NH05 313 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 ZFAND2BQ8WV99 257 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF799Q96GE5 643 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 DDOQ99489 341 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 TMEM100Q9NV29 134 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 ARMC1Q9NVT9 282 aa13.22□□□□□ -0.29
CCDC88B-205ENST00000472524 HLA-DPB1P04440 258 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 GYPBP06028 91 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 PSKH1P11801 424 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 MDH2P40926 338 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 ACTG1P63261 375 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 CRMP1Q14194 572 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 MICAQ29983 383 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 ZNF362Q5T0B9 420 aaPredicted RBP13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 MRPL21Q7Z2W9 205 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 MOGAT3Q86VF5 341 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 OR10S1Q8NGN2 331 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 NANPQ8TBE9 248 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 SPTSSAQ969W0 71 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 SLCO4A1Q96BD0 722 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 CLPTM1LQ96KA5 538 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 LRGUKQ96M69 825 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 MMP26Q9NRE1 261 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 OPN4Q9UHM6 478 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 PRPF19Q9UMS4 504 aaKnown RBP13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 COMMD3-BMI1R4GMX3 469 aa13.21□□□□□ -0.29
CCDC88B-205ENST00000472524 CEACAM18A8MTB9 384 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 F5H0A9 414 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 IFNL4K9M1U5 179 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 SPARCP09486 303 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 T-ENOLP0DO92 83 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 CLUP10909 449 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 ESCO2Q56NI9 601 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 PGAP1Q75T13 922 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 DCXRQ7Z4W1 244 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 MUC20Q8N307 709 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 LNX2Q8N448 690 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 OR2T33Q8NG76 320 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 OR10G2Q8NGC3 310 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 SLC6A7Q99884 636 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 COPS4Q9BT78 406 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 RBM4Q9BWF3 364 aaKnown RBP13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 DGCR6LQ9BY27 220 aa13.2□□□□□ -0.3
CCDC88B-205ENST00000472524 TRAPPC2LH3BP13 241 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 WIPF1O43516 503 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 SPRY1O43609 319 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 SPI1P17947 270 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 ANOS1P23352 680 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 FMO3P31513 532 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 ENTPD1P49961 510 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 SNAI3Q3KNW1 292 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 FAM201AQ5SY85 155 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 BPIFB2Q8N4F0 458 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF511Q8NB15 262 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 OR6K6Q8NGW6 343 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 OR2AE1Q8NHA4 323 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 SPRYD4Q8WW59 207 aaPredicted RBP13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 C22orf15Q8WYQ4 148 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 ASB9Q96DX5 294 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 NIPSNAP1Q9BPW8 284 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 THTPAQ9BU02 230 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 CENPMQ9NSP4 180 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 DDX28Q9NUL7 540 aaKnown RBP13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 BAIAP2Q9UQB8 552 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 N6AMT1Q9Y5N5 214 aa13.19□□□□□ -0.3
CCDC88B-205ENST00000472524 PPIAL4EA0A075B759 164 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 PPIAL4CA0A0B4J2A2 164 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 C5orf63A6NC05 138 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 LRRC30A6NM36 301 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 RIIAD1A6NNX1 92 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 PPIAL4DF5H284 164 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 IFNGP01579 166 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 PPIAL4FP0DN26 164 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 RAP2AP10114 183 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 IRF2P14316 349 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 RPS2P15880 293 aaKnown RBP13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF3P17036 446 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 COMPP49747 757 aaPredicted RBP13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 PRKXP51817 358 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 SLC25A1P53007 311 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 HILS1P60008 231 aa13.18□□□□□ -0.3
CCDC88B-205ENST00000472524 ZNF92Q03936 586 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms