RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 LOC390937A0A1W2PQ73 354 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ETV2O00321 342 aaPredicted RBP16.9■□□□□ 0.3
VIM-203ENST00000469543 IGHG1P01857 330 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ITGB2P05107 769 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 CD37P11049 281 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 PNLIPP16233 465 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 DLX5P56178 289 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 TAS2R19P59542 299 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 RAP2BP61225 183 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 SORDQ00796 357 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 PCOLCEQ15113 449 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ZNF468Q5VIY5 522 aaPredicted RBP16.9■□□□□ 0.3
VIM-203ENST00000469543 PMS2CLQ68D20 193 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 RFPL4BQ6ZWI9 263 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 LRRC18Q8N456 261 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 NOXO1Q8NFA2 376 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 OR5D18Q8NGL1 313 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 OR6S1Q8NH40 331 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ELP5Q8TE02 316 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 NPRL2Q8WTW4 380 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 THRSPQ92748 146 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 MRGPRFQ96AM1 343 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 BANF2Q9H503 90 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 GPR84Q9NQS5 396 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 SLC17A5Q9NRA2 495 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 BDP1A6H8Y1 2624 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 TMEM82A0PJX8 343 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 CCSO14618 274 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 IFNA7P01567 189 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 PRSS12P56730 875 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ACTBP60709 375 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ACTG1P63261 375 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 TAF13Q15543 124 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 SGCAQ16586 387 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 ATPAF1Q5TC12 328 aaPredicted RBP16.9■□□□□ 0.3
VIM-203ENST00000469543 TMEM81Q6P7N7 255 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 DEGS2Q6QHC5 323 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 OR8B12Q8NGG6 310 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 SLC22A8Q8TCC7 542 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 PNPLA2Q96AD5 504 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 GLTPQ9NZD2 209 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 B3GALT1Q9Y5Z6 326 aa16.9■□□□□ 0.3
VIM-203ENST00000469543 A0A1W2PNV4 684 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 MEGF11A6BM72 1044 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 I3L521 148 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 KLF7O75840 302 aaPredicted RBP16.89■□□□□ 0.29
VIM-203ENST00000469543 GABREP78334 506 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 LRRC37A5PQ49AS3 106 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 FAM57BQ71RH2 274 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 OR2AJ1Q8NGZ0 328 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 ZNF837Q96EG3 531 aaPredicted RBP16.89■□□□□ 0.29
VIM-203ENST00000469543 CCDC120Q96HB5 630 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 SEC22AQ96IW7 307 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 ZNF385AQ96PM9 386 aaKnown RBP16.89■□□□□ 0.29
VIM-203ENST00000469543 TTLL8A6PVC2 850 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 SEC61A1P61619 476 aaKnown RBP16.89■□□□□ 0.29
VIM-203ENST00000469543 CXADRP78310 365 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 ZNF260Q3ZCT1 412 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 SLC25A53Q5H9E4 307 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 AWAT2Q6E213 333 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 TRAPPC6BQ86SZ2 158 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 COMMD7Q86VX2 200 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 ZNF101Q8IZC7 436 aa16.89■□□□□ 0.29
VIM-203ENST00000469543 LIN37Q96GY3 246 aaPredicted RBP16.89■□□□□ 0.29
VIM-203ENST00000469543 LINC00862A6NCI5 91 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 F5H5P2 479 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 ZNF93P35789 620 aaPredicted RBP16.88■□□□□ 0.29
VIM-203ENST00000469543 OR3A4PP47883 348 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 QRFPP83859 136 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 OR5D14Q8NGL3 314 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 DMRTA2Q96SC8 542 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 PNRC2Q9NPJ4 139 aaKnown RBP16.88■□□□□ 0.29
VIM-203ENST00000469543 KCNK7Q9Y2U2 307 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 KCNAB3O43448 404 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 WDPCPO95876 746 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 MSX1P28360 303 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 LY6G6FQ5SQ64 297 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 AQP3Q92482 292 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 ZNF416Q9BWM5 594 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 GSX2Q9BZM3 304 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 ARL6Q9H0F7 186 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 VSIG4Q9Y279 399 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 MAB21L2Q9Y586 359 aa16.88■□□□□ 0.29
VIM-203ENST00000469543 NPIPB13A6NJU9 1138 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 ZNF726A6NNF4 738 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 NPIPB4C9JG80 1138 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 F10P00742 488 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 RPS18P62269 152 aaKnown RBP16.87■□□□□ 0.29
VIM-203ENST00000469543 HLXQ14774 488 aaPredicted RBP16.87■□□□□ 0.29
VIM-203ENST00000469543 TOMM20Q15388 145 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 ZNF584Q8IVC4 421 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 TMEM229BQ8NBD8 167 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 EDAQ92838 391 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 PROK2Q9HC23 129 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 HS3ST3B1Q9Y662 390 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 A0A0A6YYD4 124 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 F5H5K5 113 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 RAB3AP20336 220 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 HRH1P35367 487 aa16.87■□□□□ 0.29
VIM-203ENST00000469543 DHRS2Q13268 280 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 908 ms