RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TEAD3Q99594 435 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 DOK1Q99704 481 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 COQ7Q99807 217 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 RAB1BQ9H0U4 201 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 PNRC2Q9NPJ4 139 aaKnown RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 IMPAD1Q9NX62 359 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 H2AFY2Q9P0M6 372 aaPredicted RBP10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 PCDHGB1Q9Y5G3 927 aa10.18□□□□□ -0.78
SQSTM1-206ENST00000466342 TMEM129A0AVI4 362 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC22A31A6NKX4 558 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 SELENOFO60613 162 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 ICMTO60725 284 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 FAM157BP0CG42 384 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 GLRXP35754 106 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 WNT5AP41221 380 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 RAD52P43351 418 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 EVX1P49640 407 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 UCP2P55851 309 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 RPS23P62266 143 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 LCN1P1Q5VSP4 162 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 TMEM154Q6P9G4 183 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 SHFQ7M4L6 423 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 DPY19L4Q7Z388 723 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 DCXRQ7Z4W1 244 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 BCDIN3DQ7Z5W3 292 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 LINC01356Q8N9X3 169 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF540Q8NDQ6 660 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 OR10S1Q8NGN2 331 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 ST7LQ8TDW4 575 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 TRUB1Q8WWH5 349 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 NEU4Q8WWR8 484 aaPredicted RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 ATF6BQ99941 703 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 BCL2L14Q9BZR8 327 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 METTL17Q9H7H0 456 aaPredicted RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 FAM118AQ9NWS6 357 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 EIF3KQ9UBQ5 218 aaKnown RBP10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 PCDHB10Q9UN67 800 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 CMAHPQ9Y471 501 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 GMPPBQ9Y5P6 360 aa10.17□□□□□ -0.78
SQSTM1-206ENST00000466342 LOC100130705A0A1B0GUX0 176 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC16A6O15403 523 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ABHD16AO95870 558 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ERCC1P07992 297 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 NAA10P41227 235 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ECH1Q13011 328 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 SCGB2A2Q13296 93 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 EIF2B1Q14232 305 aaKnown RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 KRTAP27-1Q3LI81 207 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 RGS7BPQ6MZT1 257 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ARL9Q6T311 187 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 UNQ6126/PRO20091Q6UXV3 157 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 USP43Q70EL4 1123 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 MEPCEQ7L2J0 689 aaKnown RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF101Q8IZC7 436 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF555Q8NEP9 628 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 IPCEF1Q8WWN9 437 aaPredicted RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC7A6Q92536 515 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 UBE2FQ969M7 185 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 SLAMF6Q96DU3 332 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 C4orf45Q96LM5 186 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 DCLRE1CQ96SD1 692 aaKnown RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 VCXQ9H320 206 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 OR51B6Q9H340 312 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 ELOVL3Q9HB03 270 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 DDX28Q9NUL7 540 aaKnown RBP10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 TBCCD1Q9NVR7 557 aa10.16□□□□□ -0.78
SQSTM1-206ENST00000466342 LRP5LA4QPB2 252 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF878C9JN71 531 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MPZL2O60487 215 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 LCKP06239 509 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MRPL3P09001 348 aaKnown RBP10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 DBHP09172 617 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 PCMT1P22061 227 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 HILS1P60008 231 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 SNRPGP62308 76 aaKnown RBP10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 RIPK1Q13546 671 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 CARTPTQ16568 116 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MSMPQ1L6U9 139 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC25A30Q5SVS4 291 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MEDAGQ5VYS4 303 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 RFPL4BQ6ZWI9 263 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 SLC16A9Q7RTY1 509 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 C1orf174Q8IYL3 243 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ENTHD1Q8IYW4 607 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF454Q8N9F8 522 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 OR1J1Q8NGS3 322 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 OTOSQ8NHW6 89 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ABHD4Q8TB40 342 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 HPS1Q92902 700 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 RFKQ969G6 155 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MRPL24Q96A35 216 aaKnown RBP10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ZNF582Q96NG8 517 aaPredicted RBP10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 CNN2Q99439 309 aaKnown RBP10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 ABHD6Q9BV23 337 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 BPESC1Q9GZL8 116 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 YIPF3Q9GZM5 350 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 MS4A5Q9H3V2 200 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 HAO2Q9NYQ3 351 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 DNAJC27Q9NZQ0 273 aa10.15□□□□□ -0.78
SQSTM1-206ENST00000466342 WARS2Q9UGM6 360 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms