RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LZICQ8WZA0 190 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 HDAC2Q92769 488 aaKnown RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 NMD3Q96D46 503 aaKnown RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 BPIFA2Q96DR5 249 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 POM121L2Q96KW2 1035 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 PRRC1Q96M27 445 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 TSPAN32Q96QS1 320 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 RBP7Q96R05 134 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 ALG12Q9BV10 488 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 PRSS22Q9GZN4 317 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 OR51B6Q9H340 312 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 NARFLQ9H6Q4 476 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 CCNB1IP1Q9NPC3 277 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 SAR1AQ9NR31 198 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 DECR2Q9NUI1 292 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 TREM2Q9NZC2 230 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 EIF3KQ9UBQ5 218 aaKnown RBP6.15□□□□□ -1.42
USP54-208ENST00000461520 A4GNTQ9UNA3 340 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 AP3M1Q9Y2T2 418 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 UGT2A1Q9Y4X1 527 aa6.15□□□□□ -1.42
USP54-208ENST00000461520 hCG_2014768A0A024R1R8 64 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 IGKV1D-43A0A0B4J1Z2 117 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 IGHV1-69-2A0A0G2JMI3 117 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 LOC100653049A0A140TA62 436 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 KRTAP29-1A8MX34 341 aaPredicted RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 WNT9BO14905 357 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 SLC22A2O15244 555 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 KRT34O76011 436 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 CST2P09228 141 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 IFI30P13284 250 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ITGA2P17301 1181 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 GCH1P30793 250 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 CDAP32320 146 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 GUCA1AP43080 201 aaPredicted RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 SLC9A3P48764 834 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 GDI2P50395 445 aaKnown RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 RPL27P61353 136 aaKnown RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 PCBD1P61457 104 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 PSG4Q00888 419 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 FMODQ06828 376 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 SGCAQ16586 387 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 HFEQ30201 348 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ZNF718Q3SXZ3 478 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 RNASE12Q5GAN4 147 aaKnown RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 ACSM5Q6NUN0 579 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 FOXL2NBQ6ZUU3 175 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ARPINQ7Z6K5 226 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 MICU2Q8IYU8 434 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ZNF101Q8IZC7 436 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 RNF113BQ8IZP6 322 aaKnown RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 OFCC1Q8IZS5 231 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ZBTB34Q8NCN2 500 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ICA1LQ8NDH6 482 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ZFAND2BQ8WV99 257 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 NSMAFQ92636 917 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 RAB39BQ96DA2 213 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 ELMOD3Q96FG2 381 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 TIMD4Q96H15 378 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 TPD52L3Q96J77 140 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 PRR25Q96S07 402 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 WACQ9BTA9 647 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 METTL17Q9H7H0 456 aaPredicted RBP6.14□□□□□ -1.43
USP54-208ENST00000461520 ZNF665Q9H7R5 613 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 SAP30LQ9HAJ7 183 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 LPAR2Q9HBW0 351 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 CYSLTR2Q9NS75 346 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 TIMM10BQ9Y5J6 103 aa6.14□□□□□ -1.43
USP54-208ENST00000461520 TENM1Q9UKZ4 2725 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 DYSFO75923 2080 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 LOC100509620A0A075B734 347 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 PLSCR5A0PG75 271 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 C5orf49A4QMS7 147 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 A6NIZ1 184 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 CLDN25C9JDP6 229 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 H3BSA7 217 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 TPD52L2O43399 206 aaKnown RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 PIP5K1CO60331 668 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 MPZL1O95297 269 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 PNPP00491 289 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 IGHV1-46P01743 117 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 IFNW1P05000 195 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 IGKV2-30P06310 120 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 TUBG1P23258 451 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 LAP3P28838 519 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 WNT5AP41221 380 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 MMP15P51511 669 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 RAP1BP61224 184 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 RAP1AP62834 184 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 ERVK-25P63136 954 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 PRKCDQ05655 676 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 SLC3A1Q07837 685 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 TRAM2Q15035 370 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 TSTQ16762 297 aaKnown RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 CGB2Q6NT52 195 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 FAHD2BQ6P2I3 314 aaPredicted RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 SHQ1Q6PI26 577 aaKnown RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 ARL9Q6T311 187 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 OAFQ86UD1 273 aa6.13□□□□□ -1.43
USP54-208ENST00000461520 MEX3DQ86XN8 651 aaKnown RBP6.13□□□□□ -1.43
USP54-208ENST00000461520 NRMQ8IXM6 262 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms