RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GLT6D1Q7Z4J2 308 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF595Q8IYB9 648 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF664Q8N3J9 261 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 MS4A15Q8N5U1 240 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 PNLDC1Q8NA58 520 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 MRPS24Q96EL2 167 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 APOL4Q9BPW4 351 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 RIOK2Q9BVS4 552 aaKnown RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 PITPNM3Q9BZ71 974 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 KCNK15Q9H427 330 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ELOVL3Q9HB03 270 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM27Q9HBJ8 222 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ADGRL4Q9HBW9 690 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SLCO1B3Q9NPD5 702 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 WRAP73Q9P2S5 460 aaPredicted RBP4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC17A4Q9Y2C5 497 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 WDR45Q9Y484 360 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 CDH10Q9Y6N8 788 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 ZMYM2Q9UBW7 1377 aa4.26□□□□□ -1.73
CCDC88A-209ENST00000456975 TGIF2-C20orf24A0A0A6YYL0 155 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 A0A1W2PPE3 182 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MED19A0JLT2 244 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM218A2RU14 115 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM89A2RUT3 159 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CGB1A6NKQ9 187 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TRIM49D1C9J1S8 452 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 E5RGE8 158 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF587BE7ETH6 402 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CLDN34H7C241 214 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MANBAO00462 879 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FAAHO00519 579 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 NDUFS4O43181 175 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PRICKLE3O43900 615 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MFSD11O43934 449 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MMP23AO75900 390 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 GPANK1O95872 356 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 JCHAINP01591 159 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PMP2P02689 132 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ELANEP08246 267 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FURINP09958 794 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 KITLGP21583 273 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FGF7P21781 194 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC2A5P22732 501 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SRD5A2P31213 254 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CCKBRP32239 447 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DUSP3P51452 185 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 RAB25P57735 213 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FKBP3Q00688 224 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DLX2Q07687 328 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DPCR1Q3MIW9 517 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MESTQ5EB52 335 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PRSS36Q5K4E3 855 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 COL5A1-AS1Q5SY13 56 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PRAMEF17Q5VTA0 474 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF613Q6PF04 617 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CASP12Q6UXS9 341 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC36A1Q7Z2H8 476 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 NUFIP2Q7Z417 695 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MAVSQ7Z434 540 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 LDLRAD3Q86YD5 345 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CBWD2Q8IUF1 395 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SVBPQ8N300 66 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC5A8Q8N695 610 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SDR9C7Q8NEX9 313 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2G2Q8NGZ5 317 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 M1APQ8TC57 530 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SAP25Q8TEE9 199 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DNASE2BQ8WZ79 361 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 WBP2Q969T9 261 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TADA1Q96BN2 335 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CXorf40BQ96DE9 158 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2M2Q96R28 347 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TP53RKQ96S44 253 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FMO2Q99518 471 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CDCA4Q9BXL8 241 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DHX35Q9H5Z1 703 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 FGF21Q9NSA1 209 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 TAS2R14Q9NYV8 317 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 RAB22AQ9UL26 194 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 UBQLN1Q9UMX0 589 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 B9D1Q9UPM9 204 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MEMO1Q9Y316 297 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 EXOSC1Q9Y3B2 195 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 IGHV2-70DA0A0C4DH43 119 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SMIM35A0A1B0GVV1 85 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 A1L4Q6 167 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 SMIM9A6NGZ8 99 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 COLCA2A8K830 154 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 F5H768 121 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 LDB2O43679 373 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 RDH16O75452 317 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 NCR1O76036 304 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 CPNE6O95741 557 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 MT-ND4P03905 459 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 DUX4L4P0CJ87 422 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 RCC1P18754 421 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 RPS3P23396 243 aaKnown RBP eCLIP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 PSMA1P25786 263 aaKnown RBP4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 IVDP26440 423 aa4.25□□□□□ -1.73
CCDC88A-209ENST00000456975 GDF1P27539 372 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms