RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CST1P01037 141 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 AVPP01185 164 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 PPIAL4FP0DN26 164 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 SPI1P17947 270 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 GATA3P23771 443 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 RPS27P42677 84 aaKnown RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 TPTEP56180 551 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 SRSF2Q01130 221 aaKnown RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 SCGB2A2Q13296 93 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 ZMYND11Q15326 602 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 ZNF181Q2M3W8 571 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 TEX30Q5JUR7 227 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 LIPNQ5VXI9 398 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 FAHD2BQ6P2I3 314 aaPredicted RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 SHQ1Q6PI26 577 aaKnown RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 TRPM8Q7Z2W7 1104 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 NAA40Q86UY6 237 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 LRRC28Q86X40 367 aaPredicted RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 OR10AD1Q8NGE0 317 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 OR51L1Q8NGJ5 315 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 OR9Q1Q8NGQ5 310 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 SPTSSAQ969W0 71 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 ZNF799Q96GE5 643 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 FAHD2AQ96GK7 314 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 NIPSNAP1Q9BPW8 284 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 THTPAQ9BU02 230 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 C19orf24Q9BVV8 132 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 CHID1Q9BWS9 393 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 HCAR1Q9BXC0 346 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 PATZ1Q9HBE1 687 aaKnown RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 METRNQ9UJH8 293 aa10.14□□□□□ -0.79
USP40-210ENST00000454354 POLR3KQ9Y2Y1 108 aaPredicted RBP10.14□□□□□ -0.79
USP40-210ENST00000454354 A0A0A6YYJ9 748 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 DHRS12A0PJE2 317 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 A8MXK9 166 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 H0YL77 283 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 FSTL3O95633 263 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 FSHBP01225 129 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 IFNGP01579 166 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 LCATP04180 440 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 FMO3P31513 532 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 GRK5P34947 590 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 MDH2P40926 338 aaKnown RBP10.13□□□□□ -0.79
USP40-210ENST00000454354 GATA4P43694 442 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 SRP9P49458 86 aaKnown RBP10.13□□□□□ -0.79
USP40-210ENST00000454354 ENTPD1P49961 510 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 BLVRAP53004 296 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 MALLQ13021 153 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 DNAL1Q4LDG9 190 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 LINC01590Q5TEZ4 76 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 DCAF12L2Q5VW00 463 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 DRAM2Q6UX65 266 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 DCXRQ7Z4W1 244 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 C1QL2Q7Z5L3 287 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 MUC20Q8N307 709 aaPredicted RBP10.13□□□□□ -0.79
USP40-210ENST00000454354 CELF2-AS1Q8N7Q2 184 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 ATG16L2Q8NAA4 619 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 BHLHE23Q8NDY6 225 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 SEMA6DQ8NFY4 1073 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 ST7LQ8TDW4 575 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 GIPC3Q8TF64 312 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 CANT1Q8WVQ1 401 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 FEVQ99581 238 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 METTL17Q9H7H0 456 aaPredicted RBP10.13□□□□□ -0.79
USP40-210ENST00000454354 WDR76Q9H967 626 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 TMEM100Q9NV29 134 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 UBAP1Q9NZ09 502 aa10.13□□□□□ -0.79
USP40-210ENST00000454354 LOC105371242A0A075B767 164 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 RIIAD1A6NNX1 92 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 ZNF878C9JN71 531 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 F5H5P2 479 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 FOXH1O75593 365 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 GYPBP06028 91 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 SBK2P0C263 348 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 CLUP10909 449 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 ZNF3P17036 446 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 ANOS1P23352 680 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 CPT2P23786 658 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 ZFP36P26651 326 aaKnown RBP10.12□□□□□ -0.79
USP40-210ENST00000454354 RBMXP38159 391 aaKnown RBP10.12□□□□□ -0.79
USP40-210ENST00000454354 CD200P41217 278 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 LCN2P80188 198 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 PGAP1Q75T13 922 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 TMEM179BQ7Z7N9 219 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 KLHL36Q8N4N3 616 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 ZNF511Q8NB15 262 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 TEX47Q8TBZ9 253 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 BCAS4Q8TDM0 211 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 SLC7A6OSQ96CW6 309 aaPredicted RBP10.12□□□□□ -0.79
USP40-210ENST00000454354 REPIN1Q9BWE0 567 aaKnown RBP10.12□□□□□ -0.79
USP40-210ENST00000454354 MARCH7Q9H992 704 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 PCDHB10Q9UN67 800 aa10.12□□□□□ -0.79
USP40-210ENST00000454354 TCRBV3S1A0A5B6 114 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 CEACAM18A8MTB9 384 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 ZNF593O00488 134 aaPredicted RBP10.11□□□□□ -0.79
USP40-210ENST00000454354 GYG2O15488 501 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SPARCP09486 303 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 EPHA1P21709 976 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 SLC6A9P48067 706 aa10.11□□□□□ -0.79
USP40-210ENST00000454354 RAD23AP54725 363 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms