RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 COLCA1Q6ZS62 124 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 SLC16A9Q7RTY1 509 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 ZNF786Q8N393 782 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 OTOSQ8NHW6 89 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 CYSLTR2Q9NS75 346 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 DNAJC27Q9NZQ0 273 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 LAMP5Q9UJQ1 280 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 KLHDC2Q9Y2U9 406 aa15.9■□□□□ 0.14
SHH-203ENST00000435425 C5orf63A6NC05 138 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 TBX1O43435 398 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 KITLGP21583 273 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 ANOS1P23352 680 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 LIPAP38571 399 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 CX3CR1P49238 355 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 CDC42P60953 191 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 GGTLC2Q14390 218 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 NXNL2Q5VZ03 156 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 FBXW12Q6X9E4 464 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 BIVMQ86UB2 503 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 HIST2H2ABQ8IUE6 130 aaPredicted RBP15.89■□□□□ 0.13
SHH-203ENST00000435425 ZNF454Q8N9F8 522 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 BHLHE23Q8NDY6 225 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 FAM81AQ8TBF8 368 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 RNF133Q8WVZ7 376 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 RDH5Q92781 318 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 YIPF5Q969M3 257 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 TTTY10Q9BZA0 68 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 TOR3AQ9H497 397 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 BRD7Q9NPI1 651 aa15.89■□□□□ 0.13
SHH-203ENST00000435425 NDUFS8O00217 210 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 LY6G6DO95868 133 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 ANXA2P07355 339 aaKnown RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 OTX1P32242 354 aaPredicted RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 NR4A2P43354 598 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 GK2Q14410 553 aaPredicted RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 ZMAT1Q5H9K5 638 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 LRRN1Q6UXK5 716 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 Q6ZR03 302 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 USP51Q70EK9 711 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 PGAP1Q75T13 922 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 MRPL21Q7Z2W9 205 aaKnown RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 OR2Z1Q8NG97 314 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 OR2AE1Q8NHA4 323 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 UBE2FQ969M7 185 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 ZNF582Q96NG8 517 aaPredicted RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 MBOAT4Q96T53 435 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 CNN2Q99439 309 aaKnown RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 BPESC1Q9GZL8 116 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 YIPF3Q9GZM5 350 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 IMPAD1Q9NX62 359 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 NKIRAS2Q9NYR9 191 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 TREM2Q9NZC2 230 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 CGGBP1Q9UFW8 167 aaPredicted RBP15.88■□□□□ 0.13
SHH-203ENST00000435425 ZDHHC8Q9ULC8 765 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 ACANP16112 2415 aa15.88■□□□□ 0.13
SHH-203ENST00000435425 SLC22A31A6NKX4 558 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 VWC2LB2RUY7 222 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 PSMD9O00233 223 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 ANPEPP15144 967 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 USF1P22415 310 aaPredicted RBP15.87■□□□□ 0.13
SHH-203ENST00000435425 OPRL1P41146 370 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 RCN1Q15293 331 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 LRRC36Q1X8D7 754 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 GLYATL3Q5SZD4 288 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 FAM57BQ71RH2 274 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 KRT77Q7Z794 578 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 GID4Q8IVV7 300 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 OR8J1Q8NGP2 316 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 SAP30LQ9HAJ7 183 aa15.87■□□□□ 0.13
SHH-203ENST00000435425 ZNF469Q96JG9 3925 aaPredicted RBP15.86■□□□□ 0.13
SHH-203ENST00000435425 YLPM1P49750 1951 aaKnown RBP15.86■□□□□ 0.13
SHH-203ENST00000435425 LILRA1O75019 489 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 ALOX5APP20292 161 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 ZNF121P58317 390 aaPredicted RBP15.86■□□□□ 0.13
SHH-203ENST00000435425 TNFAIP6P98066 277 aaPredicted RBP15.86■□□□□ 0.13
SHH-203ENST00000435425 ZNF92Q03936 586 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 CDK5R2Q13319 367 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 TRIP10Q15642 601 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 SPRNQ5BIV9 151 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 GALNT4Q8N4A0 578 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 OR8G5Q8NG78 346 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 OR51G2Q8NGK0 314 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 ELMOD3Q96FG2 381 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 HRASLS5Q96KN8 279 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 DIRC2Q96SL1 478 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 EGLN1Q9GZT9 426 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 CHODLQ9H9P2 273 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 ZNF275Q9NSD4 429 aaPredicted RBP15.86■□□□□ 0.13
SHH-203ENST00000435425 COPS3Q9UNS2 423 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 GMPPBQ9Y5P6 360 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 CACNG2Q9Y698 323 aa15.86■□□□□ 0.13
SHH-203ENST00000435425 A0A096LNT2 108 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 IGHV1-69-2A0A0G2JMI3 117 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 GGT3PA6NGU5 568 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 PPIHO43447 177 aaKnown RBP15.85■□□□□ 0.13
SHH-203ENST00000435425 APOL3O95236 402 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 APOC1P02654 83 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 SELEP16581 610 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 ACHEP22303 614 aa15.85■□□□□ 0.13
SHH-203ENST00000435425 TNFSF4P23510 183 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms