RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CCSMST1Q4G0I0 132 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 MANEAQ5SRI9 462 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ANKRD16Q6P6B7 361 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CYHR1Q6ZMK1 362 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 OR4S1Q8NGB4 309 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 NAT8BQ9UHF3 227 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 PHRF1Q9P1Y6 1649 aaKnown RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 MED19A0JLT2 244 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 HCRTR1O43613 425 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 ABOP16442 354 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 CST5P28325 142 aaPredicted RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 C17orf67Q0P5P2 114 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 GSG1Q2KHT4 349 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 PKDCCQ504Y2 493 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 NHLRC1Q6VVB1 395 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 FA2HQ7L5A8 372 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 OR10G3Q8NGC4 313 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 TIMM29Q9BSF4 260 aa10.79□□□□□ -0.68
SYNPO-202ENST00000394243 NOSIPQ9Y314 301 aaKnown RBP10.79□□□□□ -0.68
SYNPO-202ENST00000394243 MYO9BQ13459 2157 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RIMBP3CA6NJZ7 1639 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RIMBP3BA6NNM3 1639 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RIMBP3Q9UFD9 1639 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 A0A1B0GTQ1 180 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 M0QZK8 103 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 GGCTO75223 188 aaKnown RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CST4P01036 141 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CD200P41217 278 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 DIO1P49895 249 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 MLF2Q15773 248 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 DRAM2Q6UX65 266 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 BHLHE23Q8NDY6 225 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TNFRSF12AQ9NP84 129 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TRAV1-2A0A0B4J238 106 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 UBE2L5PA0A1B0GUS4 154 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CRYM-AS1A6NIL9 109 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CHRNB4P30926 498 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RAC1P63000 192 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 NTHL1P78549 312 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TMEM128Q5BJH2 165 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 BLNKQ8WV28 456 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 PDXPQ96GD0 296 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 LCORQ96JN0 433 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CHRDL1Q9BU40 450 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TPSD1Q9BZJ3 242 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TINAGL1Q9GZM7 467 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RBM38Q9H0Z9 239 aaKnown RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 SLC25A19Q9HC21 320 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 FER1L6Q2WGJ9 1857 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS5A0A0G2JLQ3 304 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 A0A0G2JNG1 304 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS3K7RE56 304 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 PIAS2O75928 621 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 NHLH1Q02575 133 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 NHLH2Q02577 135 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 KIR2DS5Q14953 304 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 PRTGQ2VWP7 1150 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 FCRL6Q6DN72 434 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 IFI44Q8TCB0 444 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 EMC6Q9BV81 110 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 MS4A7Q9GZW8 240 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 OR2J2O76002 312 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 NDUFB6O95139 128 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 GUSBP08236 651 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RBP2P50120 134 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 RUNX2Q13950 521 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 HNRNPA1L2Q32P51 320 aaKnown RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 BVESQ8NE79 360 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 GPR32P1Q8NGA4 272 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 OR51F2Q8NH61 342 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 OR14A16Q8NHC5 309 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 PACRGQ96M98 296 aaPredicted RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CSF3RQ99062 836 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 GPR87Q9BY21 358 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 SDK1Q7Z5N4 2213 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 GATCO43716 136 aaKnown RBP10.78□□□□□ -0.68
SYNPO-202ENST00000394243 SEMG1P04279 462 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 NPPBP16860 134 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 ENPP1P22413 925 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CTBSQ01459 385 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 C1orf140Q5VVS0 124 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 MISPQ8IVT2 679 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 SYS1Q8N2H4 156 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 TAAR9Q96RI9 348 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 USP3Q9Y6I4 520 aa10.78□□□□□ -0.68
SYNPO-202ENST00000394243 CASP6P55212 293 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 HSD17B7P56937 341 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 PKIAP61925 76 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 SSBP1Q04837 148 aaKnown RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 DHRS7BQ6IAN0 325 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 SEZ6L2Q6UXD5 910 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 LRP11Q86VZ4 500 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 MUC20Q8N307 709 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 GSX1Q9H4S2 264 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 ELOA3CA0A087WX78 387 aaPredicted RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 TSPAN12O95859 305 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 OR5H8P0DN80 308 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 RPS27P42677 84 aaKnown RBP10.77□□□□□ -0.68
SYNPO-202ENST00000394243 AMTP48728 403 aa10.77□□□□□ -0.68
SYNPO-202ENST00000394243 SUB1P53999 127 aaKnown RBP eCLIP10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms