RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 HHLA2Q9UM44 414 aa23.39■■□□□ 1.33
MSX1-201ENST00000382723 UBL3O95164 117 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 APOC1P02654 83 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 ACHEP22303 614 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 APEX1P27695 318 aaKnown RBP23.38■■□□□ 1.33
MSX1-201ENST00000382723 ZNF404Q494X3 552 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 NANOS1Q8WY41 292 aaKnown RBP23.38■■□□□ 1.33
MSX1-201ENST00000382723 PHYHIPQ92561 330 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 KCNS3Q9BQ31 491 aa23.38■■□□□ 1.33
MSX1-201ENST00000382723 A0A1W2PR80 420 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 E9PLN8 166 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 TBX1O43435 398 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 COX5AP20674 150 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 HGFACQ04756 655 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 GABRA6Q16445 453 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 GSG1Q2KHT4 349 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 CXorf67Q86X51 503 aaPredicted RBP23.37■■□□□ 1.33
MSX1-201ENST00000382723 OR13C3Q8NGS6 347 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 TBC1D15Q8TC07 691 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 PKD1L2Q7Z442 2459 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 SRMP19623 302 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 PEX19P40855 299 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 ASB5Q8WWX0 329 aa23.37■■□□□ 1.33
MSX1-201ENST00000382723 C6orf62Q9GZU0 229 aaPredicted RBP23.37■■□□□ 1.33
MSX1-201ENST00000382723 A0A0G2JNJ9 132 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 SYT7O43581 403 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 UBE2NP61088 152 aaKnown RBP23.36■■□□□ 1.33
MSX1-201ENST00000382723 KRTAP27-1Q3LI81 207 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 DRAM2Q6UX65 266 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 BEND4Q6ZU67 534 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 MDP1Q86V88 176 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 B3GNT2Q9NY97 397 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 Q9UFV3 132 aa23.36■■□□□ 1.33
MSX1-201ENST00000382723 TRBV5-7A0A0A0MS05 114 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 TRAV1-2A0A0B4J238 106 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 LMX1BO60663 402 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 BMP5P22003 454 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 CCNOP22674 350 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 OR10A3P58181 314 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 DPPA2Q7Z7J5 298 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 NR2C2APQ86WQ0 139 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 GPR84Q9NQS5 396 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 ATRXP46100 2492 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 NBEAQ8NFP9 2946 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 TRGV8A0A0C4DH27 118 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 A0A1B0GVI7 797 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 CCL2P13500 99 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 PLP2Q04941 152 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 SNAI3Q3KNW1 292 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 ST6GALNAC3Q8NDV1 305 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 DACH2Q96NX9 599 aa23.35■■□□□ 1.33
MSX1-201ENST00000382723 LOC100509620A0A075B734 347 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 A0A1B0GTI1 187 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 LCATP04180 440 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 STOMP27105 288 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 ZNF474Q6S9Z5 364 aaPredicted RBP23.34■■□□□ 1.33
MSX1-201ENST00000382723 TPRA1Q86W33 373 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 FAM71F1Q96KD3 344 aaPredicted RBP23.34■■□□□ 1.33
MSX1-201ENST00000382723 SOX7Q9BT81 388 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 TCF7L1Q9HCS4 588 aa23.34■■□□□ 1.33
MSX1-201ENST00000382723 PLEKHB1Q9UF11 243 aaPredicted RBP23.34■■□□□ 1.33
MSX1-201ENST00000382723 RAF1P04049 648 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 RAB3BP20337 219 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 OPRM1P35372 400 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 P2RY6Q15077 328 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 MS4A3Q96HJ5 214 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 NXF2Q9GZY0 626 aaKnown RBP23.33■■□□□ 1.33
MSX1-201ENST00000382723 AK6Q9Y3D8 172 aaKnown RBP23.33■■□□□ 1.33
MSX1-201ENST00000382723 SPTA1P02549 2419 aa23.33■■□□□ 1.33
MSX1-201ENST00000382723 ACACBO00763 2458 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 TRAV8-7A0A075B6U6 113 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 IQCMA0A1B0GVH7 501 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 C5orf49A4QMS7 147 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 CD2P06729 351 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 HOXC12P31275 282 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 BMXP51813 675 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 ZNF584Q8IVC4 421 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 THRSPQ92748 146 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 MMP27Q9H306 513 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 ATPIF1Q9UII2 106 aa23.33■■□□□ 1.32
MSX1-201ENST00000382723 A6NIN4 97 aa23.32■■□□□ 1.32
MSX1-201ENST00000382723 EEF1E1-BLOC1S5C9J1V9 151 aa23.32■■□□□ 1.32
MSX1-201ENST00000382723 EEF1E1O43324 174 aaKnown RBP23.32■■□□□ 1.32
MSX1-201ENST00000382723 CASP6P55212 293 aa23.32■■□□□ 1.32
MSX1-201ENST00000382723 C1orf162Q8NEQ5 155 aaPredicted RBP23.32■■□□□ 1.32
MSX1-201ENST00000382723 SLITRK2Q9H156 845 aa23.32■■□□□ 1.32
MSX1-201ENST00000382723 OR10A2Q9H208 303 aa23.32■■□□□ 1.32
MSX1-201ENST00000382723 COX5BP10606 129 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 BHLHA15Q7RTS1 189 aaPredicted RBP23.31■■□□□ 1.32
MSX1-201ENST00000382723 CCDC36Q8IYA8 594 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 OR52H1Q8NGJ2 320 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 FGGYQ96C11 551 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 LYZL4Q96KX0 146 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 ZGRF1Q86YA3 2104 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 MAS1P04201 325 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 STAC2Q6ZMT1 411 aa23.31■■□□□ 1.32
MSX1-201ENST00000382723 ZNF275Q9NSD4 429 aaPredicted RBP23.31■■□□□ 1.32
MSX1-201ENST00000382723 RP1L1Q8IWN7 2480 aaPredicted RBP23.3■■□□□ 1.32
MSX1-201ENST00000382723 A0A0U1RQV5 110 aa23.3■■□□□ 1.32
MSX1-201ENST00000382723 APLNRP35414 380 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms