RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CHST4Q8NCG5 386 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 LIPHQ8WWY8 451 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 THRSPQ92748 146 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 FAM46BQ96A09 425 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 DNAJA3Q96EY1 480 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 MEGF10Q96KG7 1140 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 SPACA7Q96KW9 195 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 LMF2Q9BU23 707 aaKnown RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 OPA3Q9H6K4 179 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 LMAN1LQ9HAT1 526 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 RAB18Q9NP72 206 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 UFSP2Q9NUQ7 469 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 MRPL22Q9NWU5 206 aaKnown RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 RNF186Q9NXI6 227 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 CKLFQ9UBR5 152 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 FLVCR1Q9Y5Y0 555 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 ARID1AO14497 2285 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 KIF26BQ2KJY2 2108 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 LOC101059948A0A1B0GTJ6 334 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CXorf65A6NEN9 183 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 URADA6NGE7 173 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ZNF264O43296 627 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 NUDT21O43809 227 aaKnown RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 OR10H2O60403 315 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 SFT2D2O95562 160 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CEACAM5P06731 702 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CD63P08962 238 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ADH5P11766 374 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 RAB6AP20340 208 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 MAS1LP35410 378 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CDX1P47902 265 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 NPY4RP50391 375 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 RIDAP52758 137 aaKnown RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 S100A10P60903 97 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 RPS23P62266 143 aaKnown RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 MIDNQ504T8 468 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 HEPN1Q6WQI6 88 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ATG4DQ86TL0 474 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 MARCH3Q86UD3 253 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 PTX4Q96A99 478 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 C8orf44Q96CB5 159 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 KTI12Q96EK9 354 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 ZDHHC12Q96GR4 267 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 TIMM29Q9BSF4 260 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CNTD2Q9H8S5 307 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 SDHAF3Q9NRP4 125 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 DNAJB11Q9UBS4 358 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 GPR132Q9UNW8 380 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 HDGFL3Q9Y3E1 203 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ARID1BQ8NFD5 2236 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 METTL21EPA6NDL7 271 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 SERINC4A6NH21 518 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 OTOL1A6NHN0 477 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 C2orf74A8MZ97 194 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 PRKNO60260 465 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 NME2P1O60361 137 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ZNF217O75362 1048 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 SRSF10O75494 262 aaKnown RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 KAT7O95251 611 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 CST4P01036 141 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 IFNA6P05013 189 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ZNF708P17019 499 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 DRD3P35462 400 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 FHITP49789 147 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 UCP2P55851 309 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 TAS2R31P59538 309 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 QRFPP83859 136 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ENPP2Q13822 863 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 KIAA0141Q14154 515 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 GUK1Q16774 197 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 FOXRED2Q8IWF2 684 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 PNLDC1Q8NA58 520 aaKnown RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 OR56B1Q8NGI3 324 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 OR13C3Q8NGS6 347 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 WFIKKN2Q8TEU8 576 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 LCN9Q8WX39 176 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 VSTM2LQ96N03 204 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 ASB16Q96NS5 453 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 RTBDNQ9BSG5 229 aaPredicted RBP6.06□□□□□ -1.44
VPS39-202ENST00000348544 ADAM19Q9H013 955 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 LYRM4Q9HD34 91 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 FBXL17Q9UF56 701 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 SLC5A6Q9Y289 635 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 LRP12Q9Y561 859 aa6.06□□□□□ -1.44
VPS39-202ENST00000348544 LOC107986453A0A1B0GWG9 222 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 UMAD1C9J7I0 102 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 TGFBR3LH3BV60 316 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 BCAT2O15382 392 aaPredicted RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 RENP00797 406 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 HLA-DQA2P01906 255 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CXCL10P02778 98 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 ADH1AP07327 375 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 SPARCP09486 303 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 RPS2P15880 293 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 ROM1Q03395 351 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 CD226Q15762 336 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 EMC4Q5J8M3 183 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 LHX8Q68G74 356 aa6.05□□□□□ -1.44
VPS39-202ENST00000348544 EIF5AL1Q6IS14 154 aaKnown RBP6.05□□□□□ -1.44
VPS39-202ENST00000348544 SSX9Q7RTT3 188 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms