RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 DBX2Q6ZNG2 339 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 HIST2H3AQ71DI3 136 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 EXD3Q8N9H8 876 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 OR8D1Q8WZ84 308 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SAT2Q96F10 170 aaPredicted RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 NICN1Q9BSH3 213 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 TRIM2Q9C040 744 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 C5orf66Q9H5L9 145 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 CERS4Q9HA82 394 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 DAPP1Q9UN19 280 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 BRWD1Q9NSI6 2320 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 A0A087X0M5 115 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 A0A1B0GX30 115 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 RAB27BO00194 218 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SDCBPO00560 298 aaPredicted RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 EIF1AYO14602 144 aaKnown RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 CTSVO60911 334 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 MPZL1O95297 269 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 C8AP07357 584 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 EIF1AXP47813 144 aaKnown RBP12.06□□□□□ -0.48
SKA3-201ENST00000298260 ADPRHP54922 357 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 PSG6Q00889 435 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 GPR18Q14330 331 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 EEF1A1P5Q5VTE0 462 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 PRSS54Q6PEW0 395 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 GALNTL5Q7Z4T8 443 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 ADGRE4PQ86SQ3 457 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 C7orf61Q8IZ16 206 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 SPACA7Q96KW9 195 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 DUSP22Q9NRW4 184 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 GFOD1Q9NXC2 390 aa12.06□□□□□ -0.48
SKA3-201ENST00000298260 WDR87Q6ZQQ6 2873 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 WDFY3Q8IZQ1 3526 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 OR2C1O95371 312 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 WISP1O95388 367 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 EML2O95834 649 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 CSTBP04080 98 aaKnown RBP12.05□□□□□ -0.48
SKA3-201ENST00000298260 RBP2P50120 134 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 SULT1A2P50226 295 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 C4orf17Q53FE4 359 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 RCBTB1Q8NDN9 531 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 COX14Q96I36 57 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 TSPAN32Q96QS1 320 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 RARRES2Q99969 163 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 MESP1Q9BRJ9 268 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 TEX101Q9BY14 249 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 NMES1Q9C002 83 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 GRHPRQ9UBQ7 328 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 FBXL17Q9UF56 701 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 TRIOBPQ9H2D6 2365 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 A0A087WUJ7 227 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 ZNF726A6NNF4 738 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 CXCL1P09341 107 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 QDPRP09417 244 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 CEBPBP17676 345 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 DDTP30046 118 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 GDI1P31150 447 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 GJA4P35212 333 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 CDX1P47902 265 aaPredicted RBP12.05□□□□□ -0.48
SKA3-201ENST00000298260 ASCL1P50553 236 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 SUPT4H1P63272 117 aaKnown RBP12.05□□□□□ -0.48
SKA3-201ENST00000298260 USF2Q15853 346 aaPredicted RBP12.05□□□□□ -0.48
SKA3-201ENST00000298260 ZNF674Q2M3X9 581 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 ZNF260Q3ZCT1 412 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 STX12Q86Y82 276 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 ZNF679Q8IYX0 411 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 RAB42Q8N4Z0 105 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 MFSD9Q8NBP5 474 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 OR56B1Q8NGI3 324 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 LPAR4Q99677 370 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 G6PC3Q9BUM1 346 aa12.05□□□□□ -0.48
SKA3-201ENST00000298260 CXCL10P02778 98 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 FABP4P15090 132 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 G0S2P27469 103 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SLC6A9P48067 706 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 RPL18Q07020 188 aaKnown RBP12.04□□□□□ -0.48
SKA3-201ENST00000298260 DPTQ07507 201 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 UNC119Q13432 240 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 C1QL3Q5VWW1 255 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 OR2L8Q8NGY9 312 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 ERGIC1Q969X5 290 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SLC25A36Q96CQ1 311 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 GDF2Q9UK05 429 aaPredicted RBP12.04□□□□□ -0.48
SKA3-201ENST00000298260 COLEC10Q9Y6Z7 277 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 TNRC18O15417 2968 aaPredicted RBP12.04□□□□□ -0.48
SKA3-201ENST00000298260 CSTAP01040 98 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 HKR1P10072 659 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 PVRP15151 417 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 GLRA1P23415 457 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 WASP42768 502 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 GRK6P43250 576 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 SSBP1Q04837 148 aaKnown RBP12.04□□□□□ -0.48
SKA3-201ENST00000298260 RASGEF1BQ0VAM2 473 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 PRICKLE4Q2TBC4 344 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 KHDC3LQ587J8 217 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 ZNF529Q6P280 563 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 FBXO42Q6P3S6 717 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 CBLN3Q6UW01 205 aa12.04□□□□□ -0.48
SKA3-201ENST00000298260 KTI12Q96EK9 354 aaPredicted RBP12.04□□□□□ -0.48
SKA3-201ENST00000298260 LRRC3BQ96PB8 259 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms