RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NTHL1P78549 312 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 TMEM52BQ4KMG9 183 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 RNASEKQ6P5S7 137 aaKnown RBP9.01□□□□□ -0.97
COL6A3-201ENST00000295550 DGAT2L6Q6ZPD8 337 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 GRINAQ7Z429 371 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 OR51H1Q8NH63 302 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 PHYHIPQ92561 330 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 ACOXLQ9NUZ1 547 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 BOKQ9UMX3 212 aaPredicted RBP9.01□□□□□ -0.97
COL6A3-201ENST00000295550 ANKRD61A6NGH8 418 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 TUBAL3A6NHL2 446 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 C1orf61Q13536 156 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 RHOUQ7L0Q8 258 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 LINC00346Q8IVM7 164 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 FAM26EQ8N5C1 309 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 TRAPPC1Q9Y5R8 145 aa9.01□□□□□ -0.97
COL6A3-201ENST00000295550 GALR3O60755 368 aaPredicted RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 MRPL33O75394 65 aaKnown RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 CLEC2LP0C7M8 214 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 TAS2R45P59539 299 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ERVFC1-1P60608 527 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 GPR85P60893 370 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 LCN15Q6UWW0 184 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 TMEM184AQ6ZMB5 413 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 LHX4Q969G2 390 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 PLEKHF2Q9H8W4 249 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 CSF3P09919 207 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 GPR12P47775 334 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 DEFB103AP81534 67 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 YOD1Q5VVQ6 348 aaPredicted RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 NCR3LG1Q68D85 454 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 STACQ99469 402 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 SPNS1Q9H2V7 528 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ST8SIA3O43173 380 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 GABREP78334 506 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 UQCC3Q6UW78 93 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 OR5AP2Q8NGF4 316 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ARRDC3Q96B67 414 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 RASD2Q96D21 266 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 DBX1A6NMT0 343 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 DPTQ07507 201 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 IFI44Q8TCB0 444 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 RXFP4Q8TDU9 374 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 MUCL1Q96DR8 90 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 PIAS3Q9Y6X2 628 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 CCDC187A0A096LP49 1063 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF320A2RRD8 509 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 AKR7A2O43488 359 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 BCL2L11O43521 198 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 MFSD12Q6NUT3 480 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 TIPARPQ7Z3E1 657 aaKnown RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 TMEM255BQ8WV15 326 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 TRAV34A0A0B4J273 112 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ZNF732B4DXR9 585 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 RAB38P57729 211 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ACKR1Q16570 336 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 OR52I2Q8NH67 350 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 CACNA1HO95180 2353 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 LRRK1Q38SD2 2015 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 A0A0B4J203 849 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ABCD4O14678 606 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 SDHAP31040 664 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 APH1AQ96BI3 265 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 OPALINQ96PE5 141 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 ZBTB32Q9Y2Y4 487 aaPredicted RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 FLVCR1Q9Y5Y0 555 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 E5RGE8 158 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 EDDM3AQ14507 147 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 BHLHA9Q7RTU4 235 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 OR10X1Q8NGY0 326 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 MAP6Q96JE9 813 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 SIRT3Q9NTG7 399 aaPredicted RBP9□□□□□ -0.97
COL6A3-201ENST00000295550 NSG2Q9Y328 171 aa9□□□□□ -0.97
COL6A3-201ENST00000295550 UBE2L5PA0A1B0GUS4 154 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 FZD6O60353 706 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 LGI1O95970 557 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 MAP2K6P52564 334 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 LYRM7Q5U5X0 104 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 PRSS45Q7RTY3 260 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 FBXO34Q9NWN3 711 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 B3GAT1Q9P2W7 334 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 PRAMEF26H0Y7S4 382 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 GPX5O75715 221 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 FGF7P21781 194 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 MMP11P24347 488 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 IGFBP6P24592 240 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-201ENST00000295550 RAB13P51153 203 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 PMS2P11Q13670 270 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 CCSMST1Q4G0I0 132 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 OR2J3O76001 311 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 CST2P09228 141 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 HRH1P35367 487 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 OR2A1Q8NGT9 310 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 TMEM184BQ9Y519 407 aaPredicted RBP8.99□□□□□ -0.97
COL6A3-201ENST00000295550 COL4A5P29400 1685 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 A0A1B0GUH1 482 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 DCAF7P61962 342 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 FAM78AQ5JUQ0 283 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 OR1J1Q8NGS3 322 aa8.99□□□□□ -0.97
COL6A3-201ENST00000295550 UBQLN3Q9H347 655 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms