RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 TMPRSS11FQ6ZWK6 438 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 NECAP1Q8NC96 275 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 GLYATL1Q969I3 302 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 GALNT14Q96FL9 552 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 CDC6Q99741 560 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 GPR87Q9BY21 358 aa13.19□□□□□ -0.3
PTPRA-201ENST00000216877 TDRD15B5MCY1 1934 aaKnown RBP13.19□□□□□ -0.3
PTPRA-201ENST00000216877 DOCK8Q8NF50 2099 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 NDUFB2O95178 105 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 IDH3GP51553 393 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 POLR2LP62875 67 aaKnown RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 ISXQ2M1V0 245 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SLC22A25Q6T423 547 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 MDGA2Q7Z553 956 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 CMTM8Q8IZV2 173 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SLC2A12Q8TD20 617 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 NOL4LQ96MY1 436 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 PRSS27Q9BQR3 290 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 LMAN1LQ9HAT1 526 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 TUBG2Q9NRH3 451 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SLC2A8Q9NY64 477 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 GDE1Q9NZC3 331 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 HDGFL3Q9Y3E1 203 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SIAH2O43255 324 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 EFSO43281 561 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 DUS4LO95620 317 aaKnown RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SNCAP37840 140 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 ERVFRD-1P60508 538 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 GLO1Q04760 184 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 EIPR1Q53HC9 387 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SLC35D3Q5M8T2 416 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 GKN2Q86XP6 184 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 OR10C1Q96KK4 312 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 SLC22A12Q96S37 553 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 A0A1W2PR48 441 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 RAB27BO00194 218 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 HNF1AP20823 631 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 OR3A2P47893 321 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 ARMC6Q6NXE6 501 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 RSPO2Q6UXX9 243 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 NPAS4Q8IUM7 802 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF689Q96CS4 500 aaPredicted RBP13.18□□□□□ -0.3
PTPRA-201ENST00000216877 C19orf12Q9NSK7 152 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 MEMO1Q9Y316 297 aa13.18□□□□□ -0.3
PTPRA-201ENST00000216877 ELOA3CA0A087WX78 387 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 DUXAA6NLW8 204 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 SDCBPO00560 298 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 OR6A2O95222 327 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 CST4P01036 141 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 RPLP2P05387 115 aaKnown RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF550Q7Z398 422 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 COMMD1Q8N668 190 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 OR2L3Q8NG85 312 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 CASD1Q96PB1 797 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 DHDHQ9UQ10 334 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 KLHDC2Q9Y2U9 406 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 Q9Y3F1 56 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 HEATR5AQ86XA9 2040 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 IGLV3-16A0A075B6K0 115 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 XRCC2O43543 280 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 ZIC2O95409 532 aaPredicted RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 CSTBP04080 98 aaKnown RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 F13BP05160 661 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 TACR3P29371 465 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 PMELP40967 661 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 CX3CR1P49238 355 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 RTL6Q6ICC9 239 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 ZNF880Q6PDB4 577 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 BTNL3Q6UXE8 466 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 M1APQ8TC57 530 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 NEK7Q8TDX7 302 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 PDE7BQ9NP56 450 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 CHD3Q12873 2000 aaKnown RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 BORCS7-ASMTA0A0B4J1R7 106 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 RPLP1P05386 114 aaKnown RBP13.17□□□□□ -0.3
PTPRA-201ENST00000216877 NID1P14543 1247 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 GNB3P16520 340 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 TFPI2P48307 235 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 TIFAQ96CG3 184 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 EPHX3Q9H6B9 360 aa13.17□□□□□ -0.3
PTPRA-201ENST00000216877 PLXND1Q9Y4D7 1925 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 C9J4A7 227 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 JTBO76095 146 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 GZMBP10144 247 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 ARFRP1Q13795 201 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 RTN4RL1Q86UN2 441 aaPredicted RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 OR4K15Q8NH41 348 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 HAS2Q92819 552 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 TAAR8Q969N4 342 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SLC22A18Q96BI1 424 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 PLD4Q96BZ4 506 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SLC25A44Q96H78 314 aaPredicted RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 NIPSNAP3BQ9BS92 247 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SLC25A31Q9H0C2 315 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 HELZP42694 1942 aaKnown RBP13.16□□□□□ -0.3
PTPRA-201ENST00000216877 CDRT15L2A8MXV6 281 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 SLC2A5P22732 501 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 GPR1P46091 355 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 PMS2P11Q13670 270 aa13.16□□□□□ -0.3
PTPRA-201ENST00000216877 CLLU1OSQ5K130 101 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms