RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 IZUMO4Q1ZYL8 232 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 LAX1Q8IWV1 398 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 OR5D18Q8NGL1 313 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 OR1L4Q8NGR5 311 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 FAM71F1Q96KD3 344 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-201ENST00000011700 CMC2Q9NRP2 79 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 OSGIN1Q9UJX0 560 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 H3BML4 177 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 CAPNS1P04632 268 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 OTX2P32243 289 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 HOXD13P35453 343 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF90Q03938 601 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 C16orf70Q9BSU1 422 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 ULBP3Q9BZM4 244 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 MMP28Q9H239 520 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 GSX1Q9H4S2 264 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-201ENST00000011700 RHOFQ9HBH0 211 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 GLRX2Q9NS18 164 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 MALRD1Q5VYJ5 2156 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 DUXBA0A1W2PPF3 345 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 CXorf65A6NEN9 183 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF724A8MTY0 619 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 CST4P01036 141 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 HOXB5P09067 269 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 CCL5P13501 91 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 ZBTB25P24278 435 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 RPL27P61353 136 aaKnown RBP5.56□□□□□ -1.52
VPS13D-201ENST00000011700 EML3Q32P44 896 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 JMJD6Q6NYC1 403 aaPredicted RBP5.56□□□□□ -1.52
VPS13D-201ENST00000011700 NANOGP1Q8N7R0 232 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 OR10C1Q96KK4 312 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF778Q96MU6 729 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 A4GNTQ9UNA3 340 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 WNT6Q9Y6F9 365 aa5.56□□□□□ -1.52
VPS13D-201ENST00000011700 SULT1A3P0DMM9 295 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SULT1A4P0DMN0 295 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 GGNBP1Q5YKI7 109 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 Q6ZNX1 250 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SLC36A1Q7Z2H8 476 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 LYG2Q86SG7 212 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZADH2Q8N4Q0 377 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 C3orf30Q96M34 536 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TMPRSS13Q9BYE2 586 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 NMES1Q9C002 83 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 S1PR5Q9H228 398 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 GHITMQ9H3K2 345 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 IFT22Q9H7X7 185 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 KCMF1Q9P0J7 381 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 COL5A3P25940 1745 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 GREB1LQ9C091 1923 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 HSD17B6O14756 317 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SELENOFO60613 162 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 OR4Q2P0C623 313 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SCGB1C2P0DMR2 95 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 OR8G3PP0DMU2 310 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 RPL12P30050 165 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ATP5IP56385 69 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SEMA3BQ13214 749 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SLC48A1Q6P1K1 146 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF429Q86V71 674 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 APOBEC3DQ96AK3 386 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF764Q96H86 408 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 REEP6Q96HR9 211 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 APOOQ9BUR5 198 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TMEM167BQ9NRX6 74 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TRGV10A0A0A0MS01 117 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 A0A0A6YYJ9 748 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 AGPAT2O15120 278 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 USF1P22415 310 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 CLLU1Q5K131 121 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 OR4C16Q8NGL9 310 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 PIGCQ92535 297 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TEX101Q9BY14 249 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 SPNS1Q9H2V7 528 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 USP36Q9P275 1121 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TEAD1P28347 426 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 FAM3BP58499 235 aaPredicted RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 EIF3IQ13347 325 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 C12orf54Q6X4T0 127 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 OR2M3Q8NG83 312 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 RBM14Q96PK6 669 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 RAB27BO00194 218 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 B4GAT1O43505 415 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 TIMP1P01033 207 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 CD37P11049 281 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 APEX1P27695 318 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 FOXK2Q01167 660 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 FDX2Q6P4F2 183 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF534Q76KX8 674 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 CALHM3Q86XJ0 350 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 MDGA1Q8NFP4 955 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 WWTR1Q9GZV5 400 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 NXF2Q9GZY0 626 aaKnown RBP5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZNF816-ZNF321PA0A0X1KG74 233 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 A0A1W2PPK0 400 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 PRAMEF25A6NGN4 478 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 CBY3A6NI87 242 aa5.55□□□□□ -1.52
VPS13D-201ENST00000011700 ZFP92A6NM28 416 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms