RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CA10Q9NS85 328 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ERVK13-1Q9NX77 482 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ERVK-18Q9QC07 812 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 CYB5R1Q9UHQ9 305 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 PRRC2AP48634 2157 aaKnown RBP8.53□□□□□ -1.04
CLN3-261ENST00000637686 MYO9AB2RTY4 2548 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 RTTNQ86VV8 2226 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 OTOGQ6ZRI0 2925 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 CCDC168Q8NDH2 2452 aa8.53□□□□□ -1.04
CLN3-261ENST00000637686 ZNF670-ZNF695F2Z2N8 137 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 OVOL3O00110 214 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 MYL12BO14950 172 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 SELENOFO60613 162 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF254O75437 659 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 MPZL1O95297 269 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 HLA-DQA2P01906 255 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 TFAP2AP05549 437 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 CST2P09228 141 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 CCL2P13500 99 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF35P13682 527 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF32P17041 273 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 APOBEC3AP31941 199 aaPredicted RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 DCTDP32321 178 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 PTH2RP49190 550 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 CDH15P55291 814 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 WNT4P56705 351 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 TAS2R43P59537 309 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 HIST1H3AP68431 136 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 NKX6-1P78426 367 aaPredicted RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 HIST2H3PS2Q5TEC6 136 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 OTPQ5XKR4 325 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 XAF1Q6GPH4 301 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF544Q6NX49 715 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 TMEM154Q6P9G4 183 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 KCTD18Q6PI47 426 aaPredicted RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 PLEKHG7Q6ZR37 379 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 HIST2H3AQ71DI3 136 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ERI1Q8IV48 349 aaKnown RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 MUC15Q8N387 334 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 KLHL36Q8N4N3 616 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF511Q8NB15 262 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF485Q8NCK3 441 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 NUP37Q8NFH4 326 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 OR51L1Q8NGJ5 315 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 C11orf40Q8WZ69 217 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 RORBQ92753 470 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 MUL1Q969V5 352 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 CCDC90BQ9GZT6 254 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 EMC7Q9NPA0 242 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 CBLN4Q9NTU7 201 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ZNF701Q9NV72 531 aaPredicted RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 FAIMQ9NVQ4 179 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 ATPIF1Q9UII2 106 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 FBXL3Q9UKT7 428 aa8.52□□□□□ -1.05
CLN3-261ENST00000637686 LSM2Q9Y333 95 aaKnown RBP8.52□□□□□ -1.05
CLN3-261ENST00000637686 IQCMA0A1B0GVH7 501 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 A0A1W2PQL4 384 aaPredicted RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 DAPL1A0PJW8 107 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 FAM171A2A8MVW0 826 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ZNF593O00488 134 aaPredicted RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 GPANK1O95872 356 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 MT-ND5P03915 603 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 CD1AP06126 327 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 TACSTD2P09758 323 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 OR4A8P0C604 315 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 PAX1P15863 534 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 NR4A1P22736 598 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 THBS4P35443 961 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 CDKN1AP38936 164 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ATP5J2P56134 94 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 PCBD1P61457 104 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ADAM8P78325 824 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 PSG4Q00888 419 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ZNF85Q03923 595 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 PLP2Q04941 152 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 SCRN3Q0VDG4 424 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 DBPQ10586 325 aaPredicted RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 MLLT11Q13015 90 aaPredicted RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 AQP6Q13520 282 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 GPR50Q13585 617 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ENDOGQ14249 297 aaKnown RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 SPHARQ15513 63 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 MST1LQ2TV78 715 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 PABPC1L2AQ5JQF8 200 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ZNF684Q5T5D7 378 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 C11orf71Q6IPW1 123 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 ZNF322Q6U7Q0 402 aaPredicted RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 SPNS3Q6ZMD2 512 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 KCTD8Q6ZWB6 473 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 DPY19L4Q7Z388 723 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 KRTAP1-3Q8IUG1 177 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 LRRC75A-AS1Q8N1F1 130 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 CPEB3Q8NE35 698 aaKnown RBP8.51□□□□□ -1.05
CLN3-261ENST00000637686 SLC30A7Q8NEW0 376 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 GJC3Q8NFK1 279 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 OR10H4Q8NGA5 316 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 OR6N2Q8NGY6 317 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 AKR7LQ8NHP1 331 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 SGCDQ92629 289 aa8.51□□□□□ -1.05
CLN3-261ENST00000637686 COG8Q96MW5 612 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms