RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR10A3P58181 314 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 PSMA6P60900 246 aaKnown RBP17.56■□□□□ 0.4
CLN3-250ENST00000636839 DGUOKQ16854 277 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 ZNF829Q3KNS6 432 aaPredicted RBP17.56■□□□□ 0.4
CLN3-250ENST00000636839 PABPC1L2AQ5JQF8 200 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 BCL2L15Q5TBC7 163 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 RHOUQ7L0Q8 258 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 PRSS45Q7RTY3 260 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 OR1K1Q8NGR3 316 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 HAVCR2Q8TDQ0 301 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 DERL3Q96Q80 235 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 KCNJ15Q99712 375 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 KCNS3Q9BQ31 491 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 COMMD4Q9H0A8 199 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 KCNN2Q9H2S1 579 aa17.56■□□□□ 0.4
CLN3-250ENST00000636839 TRBV5-5A0A0J9YX44 114 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 CD79AP11912 226 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 HNRNPA0Q13151 305 aaKnown RBP17.55■□□□□ 0.4
CLN3-250ENST00000636839 FAM57BQ71RH2 274 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 OR6K3Q8NGY3 331 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 OR1F12Q8NHA8 337 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 BCL2L2Q92843 193 aaPredicted RBP17.55■□□□□ 0.4
CLN3-250ENST00000636839 RNF121Q9H920 327 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 PLSCR4Q9NRQ2 329 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 A6NIN4 97 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 PRRG2O14669 202 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 RAD51DO75771 328 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 CLPXO76031 633 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 UCHL1P09936 223 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 DCTDP32321 178 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 GRB2P62993 217 aaKnown RBP17.55■□□□□ 0.4
CLN3-250ENST00000636839 SCRN3Q0VDG4 424 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 PMPCAQ10713 525 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 RAB35Q15286 201 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 NRN1LQ496H8 165 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 OR8B12Q8NGG6 310 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 ZNF835Q9Y2P0 537 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 RELNP78509 3460 aa17.55■□□□□ 0.4
CLN3-250ENST00000636839 SMG1Q96Q15 3661 aaKnown RBP17.54■□□□□ 0.4
CLN3-250ENST00000636839 OR6C6A6NF89 314 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 SERPINA3P01011 423 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 IL1AP01583 271 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 ANXA2P07355 339 aaKnown RBP17.54■□□□□ 0.4
CLN3-250ENST00000636839 ACSM4P0C7M7 580 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 CCL2P13500 99 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 CRYGSP22914 178 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 CTSSP25774 331 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 SLC6A9P48067 706 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 STK11Q15831 433 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 Q499Y3 187 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 Q6ZT83 130 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 ELMOD2Q8IZ81 293 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 MCFD2Q8NI22 146 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 SLC25A46Q96AG3 418 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 CXorf56Q9H5V9 222 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 LOC107986453A0A1B0GWG9 222 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 IL2RAP01589 272 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 OTX1P32242 354 aaPredicted RBP17.54■□□□□ 0.4
CLN3-250ENST00000636839 PTGER4P35408 488 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 HTR5AP47898 357 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 BMXP51813 675 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 SF3B4Q15427 424 aaKnown RBP eCLIP17.54■□□□□ 0.42e-7■■■■□ 24.8
CLN3-250ENST00000636839 GFOD2Q3B7J2 385 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 ABHD12BQ7Z5M8 362 aaPredicted RBP17.54■□□□□ 0.4
CLN3-250ENST00000636839 OR51E1Q8TCB6 317 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 GPR148Q8TDV2 347 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 TMEM106AQ96A25 262 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 MED18Q9BUE0 208 aa17.54■□□□□ 0.4
CLN3-250ENST00000636839 PLEKHB1Q9UF11 243 aaPredicted RBP17.54■□□□□ 0.4
CLN3-250ENST00000636839 M0R135 149 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 APEX1P27695 318 aaKnown RBP17.53■□□□□ 0.4
CLN3-250ENST00000636839 TIMP3P35625 211 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 PEX19P40855 299 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 PCBD1P61457 104 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 ZNF404Q494X3 552 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 ASPHD2Q6ICH7 369 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 ANKRD16Q6P6B7 361 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 GABRG1Q8N1C3 465 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 TSEN15Q8WW01 171 aaKnown RBP17.53■□□□□ 0.4
CLN3-250ENST00000636839 ASB5Q8WWX0 329 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 ZNF799Q96GE5 643 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 HDHD2Q9H0R4 259 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 TP63Q9H3D4 680 aaPredicted RBP17.53■□□□□ 0.4
CLN3-250ENST00000636839 NIPAL2Q9H841 368 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 CCDC59Q9P031 241 aaKnown RBP17.53■□□□□ 0.4
CLN3-250ENST00000636839 NUFIP1Q9UHK0 495 aaKnown RBP17.53■□□□□ 0.4
CLN3-250ENST00000636839 PROCRQ9UNN8 238 aa17.53■□□□□ 0.4
CLN3-250ENST00000636839 TRAV8-7A0A075B6U6 113 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 GATBO75879 557 aaKnown RBP17.52■□□□□ 0.4
CLN3-250ENST00000636839 CEACAM8P31997 349 aaPredicted RBP17.52■□□□□ 0.4
CLN3-250ENST00000636839 RORCP51449 518 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 RAB1AP62820 205 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 SNAI3Q3KNW1 292 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 TBRG1Q3YBR2 411 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 SLC36A2Q495M3 483 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 HSD17B12Q53GQ0 312 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 DACH2Q96NX9 599 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 SLC30A2Q9BRI3 323 aa17.52■□□□□ 0.4
CLN3-250ENST00000636839 C6orf62Q9GZU0 229 aaPredicted RBP17.52■□□□□ 0.4
CLN3-250ENST00000636839 SLC17A5Q9NRA2 495 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms