RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ZNF813Q6ZN06 617 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 Q6ZSR3 168 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SLC16A14Q7RTX9 510 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 LRRC28Q86X40 367 aaPredicted RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 PARP16Q8N5Y8 322 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 C1orf162Q8NEQ5 155 aaPredicted RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 CEP19Q96LK0 163 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 KCNS3Q9BQ31 491 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SLC30A2Q9BRI3 323 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 CCDC32Q9BV29 185 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 PBOV1Q9GZY1 135 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 PPIL3Q9H2H8 161 aaKnown RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 TPK1Q9H3S4 243 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 RGCCQ9H4X1 137 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 MOV10Q9HCE1 1003 aaKnown RBP9.28□□□□□ -0.92
CLN3-248ENST00000636355 SLC17A5Q9NRA2 495 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 UPB1Q9UBR1 384 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 GTF2A1LQ9UNN4 478 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 SLC22A13Q9Y226 551 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 CFAP47Q6ZTR5 3102 aa9.28□□□□□ -0.92
CLN3-248ENST00000636355 CELSR3Q9NYQ7 3312 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 TLN1Q9Y490 2541 aaKnown RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 A0A1B0GTH9 108 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 A0A1B0GVI7 797 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 LOC390937A0A1W2PQ73 354 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 J3QW42 95 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 M0R135 149 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 PIN1P1O15428 100 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 UBL3O95164 117 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 IGLV3-1P01715 115 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 MMP7P09237 267 aaPredicted RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 ACSM4P0C7M7 580 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 EPXP11678 715 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 HOXB1P14653 301 aaPredicted RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 ARR3P36575 388 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 PPP5CP53041 499 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 TPTEP56180 551 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ZNF121P58317 390 aaPredicted RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 RIN1Q13671 783 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 CCDC92Q53HC0 331 aaPredicted RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 FAM27D1Q5T7N8 215 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ANKRD16Q6P6B7 361 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 BAIAP2L2Q6UXY1 529 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 STAC2Q6ZMT1 411 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 Q6ZT83 130 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 SPATC1Q76KD6 591 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 DOK3Q7L591 496 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 PRSS45Q7RTY3 260 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 OR1F12Q8NHA8 337 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ASB5Q8WWX0 329 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 FBXO17Q96EF6 278 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ZNF837Q96EG3 531 aaPredicted RBP9.27□□□□□ -0.93
CLN3-248ENST00000636355 ZNF799Q96GE5 643 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 SLX1AQ9BQ83 275 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 OR2H1Q9GZK4 316 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 OPA3Q9H6K4 179 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 ETV7Q9Y603 341 aa9.27□□□□□ -0.93
CLN3-248ENST00000636355 INTS1Q8N201 2190 aaKnown RBP9.26□□□□□ -0.93
CLN3-248ENST00000636355 SVILO95425 2214 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ISPDA4D126 451 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ANXA2P2A6NMY6 339 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 IFITM5A6NNB3 132 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 DVL2O14641 736 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 RGS5O15539 181 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 SYT7O43581 403 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 TPPPO94811 219 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ANXA2P07355 339 aaKnown RBP9.26□□□□□ -0.93
CLN3-248ENST00000636355 ERCC1P07992 297 aaPredicted RBP9.26□□□□□ -0.93
CLN3-248ENST00000636355 CLEC2LP0C7M8 214 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 CALCBP10092 127 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ZNF32P17041 273 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 COX5AP20674 150 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 THBS2P35442 1172 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 TIMP3P35625 211 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ARF1P84077 181 aaKnown RBP9.26□□□□□ -0.93
CLN3-248ENST00000636355 PLEKHN1Q494U1 663 aaPredicted RBP9.26□□□□□ -0.93
CLN3-248ENST00000636355 OTPQ5XKR4 325 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 TMEM53Q6P2H8 277 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 NR2C2APQ86WQ0 139 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 CDH26Q8IXH8 852 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 LRRC18Q8N456 261 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 C17orf78Q8N4C9 275 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ZNF283Q8N7M2 679 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 PLPP7Q8NBV4 271 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 OR8B12Q8NGG6 310 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 OR13C3Q8NGS6 347 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 FAM57AQ8TBR7 257 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 TRIB1Q96RU8 372 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 SH3GL3Q99963 347 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 SLC5A6Q9Y289 635 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 RAXQ9Y2V3 346 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 V9GY05 133 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 ACACBO00763 2458 aa9.26□□□□□ -0.93
CLN3-248ENST00000636355 MAP1BP46821 2468 aaKnown RBP9.25□□□□□ -0.93
CLN3-248ENST00000636355 C1QTNF9BB2RNN3 333 aa9.25□□□□□ -0.93
CLN3-248ENST00000636355 MTRF1O75570 445 aaKnown RBP9.25□□□□□ -0.93
CLN3-248ENST00000636355 ALX3O95076 343 aa9.25□□□□□ -0.93
CLN3-248ENST00000636355 IL18BPO95998 194 aa9.25□□□□□ -0.93
CLN3-248ENST00000636355 APOA1P02647 267 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms