RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 OR2J2O76002 312 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 GNB3P16520 340 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 KIR2DS4P43632 304 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TIAL1Q01085 375 aaKnown RBP eCLIP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 KIR2DS1Q14954 304 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 ZFP82Q8N141 532 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 C20orf24Q9BUV8 137 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 ZNF629Q9UEG4 869 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 FOLR1P15328 257 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MMP15P51511 669 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 PCBP4P57723 403 aaKnown RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TOR2AQ5JU69 321 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MAMSTRQ6ZN01 415 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 DPPA2Q7Z7J5 298 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MRPL41Q8IXM3 137 aaKnown RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 SLC38A9Q8NBW4 561 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MORN4Q8NDC4 146 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 NT5CQ8TCD5 201 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 ST8SIA4Q92187 359 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 LANCL2Q9NS86 450 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 PCYT1BQ9Y5K3 369 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 FLVCR1Q9Y5Y0 555 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 URGCP-MRPS24S4R325 110 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 RREB1Q92766 1687 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TRIOBPQ9H2D6 2365 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 NHSQ6T4R5 1651 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 STRCQ7RTU9 1775 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 A0A0B4J2E0 115 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 IGHV3-64DA0A0J9YX35 117 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 A0A1B0GX12 115 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 ATP6V1G2-DDX39BF2Z307 99 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 ZNF354AO60765 605 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 NKX2-2O95096 273 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 ZFPL1O95159 310 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 GUCA2AQ02747 115 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 KTI12Q96EK9 354 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 DYNLRB1Q9NP97 96 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 GFOD1Q9NXC2 390 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 FBXL4Q9UKA2 621 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 GRPP07492 148 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 OR13C7P0DN81 318 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 EMP3P54852 163 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 EDDM3BP56851 147 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 FAM74A1Q5RGS3 127 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 TCTE3Q8IZS6 198 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 C10orf111Q8N326 155 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 OR2G3Q8NGZ4 309 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 MSI2Q96DH6 328 aaKnown RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 HEYLQ9NQ87 328 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 SLCO1B1Q9Y6L6 691 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 ZFP92A6NM28 416 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 TSTD3H0UI37 97 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 SLC17A2O00624 439 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 SCO1O75880 301 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 BAXQ07812 192 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 PDZK1IP1Q13113 114 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 IL10RAQ13651 578 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 PPP1R1CQ8WVI7 109 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 WDR34Q96EX3 536 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 PHF7Q9BWX1 381 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 FBXO34Q9NWN3 711 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 HSPB2A8KAH6 182 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 XRCC3O43542 346 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 EDDM3AQ14507 147 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 HSPB2Q16082 182 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 C9orf50Q5SZB4 431 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 OR8G2PQ6IF36 304 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 THSD4Q6ZMP0 1018 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 NLRC3Q7RTR2 1065 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 OR51A2Q8NGJ7 313 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 APH1BQ8WW43 257 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 RDH5Q92781 318 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 EMG1Q92979 244 aaKnown RBP12.68□□□□□ -0.38
CPSF1-212ENST00000616140 C14orf79Q96F83 325 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 FER1L6-AS2Q96M78 137 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 BARHL1Q9BZE3 327 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 PBOV1Q9GZY1 135 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 GPR160Q9UJ42 338 aa12.68□□□□□ -0.38
CPSF1-212ENST00000616140 CKAP5Q14008 2032 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 PYCARD-AS1I3L0S3 204 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 HS3ST1O14792 307 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 LINC01565O15544 149 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 BRICD5Q6PL45 260 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 Q6ZS52 159 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 OR10Z1Q8NGY1 313 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 WDFY2Q96P53 400 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 RPP25Q9BUL9 199 aaKnown RBP12.67□□□□□ -0.38
CPSF1-212ENST00000616140 PLK3Q9H4B4 646 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 TMEM231Q9H6L2 316 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 PLEKHF2Q9H8W4 249 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 MMP25Q9NPA2 562 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 AKAP6Q13023 2319 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 SSC5DA1L4H1 1573 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 FRG2CA6NGY1 282 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 KLRC4-KLRK1H3BQV0 150 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 HSD17B6O14756 317 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 CXCL13O43927 109 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 SDHBP21912 280 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 HOXC8P31273 242 aa12.67□□□□□ -0.38
CPSF1-212ENST00000616140 BAP18Q8IXM2 172 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms