RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GTF2A1LQ9UNN4 478 aa12.46□□□□□ -0.41
USP39-220ENST00000613444 A0A1W2PPK0 400 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 ACOD1A6NK06 481 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 E9PLN8 166 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 DOK2O60496 412 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 CLPXO76031 633 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 DBHP09172 617 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 TMIGD3P0DMS9 266 aaPredicted RBP12.46□□□□□ -0.42
USP39-220ENST00000613444 GLI4P10075 376 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 CX3CR1P49238 355 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 MXD1Q05195 221 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 Q499Y3 187 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 ANKRD16Q6P6B7 361 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 NAA40Q86UY6 237 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 GABRG1Q8N1C3 465 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 OR1F12Q8NHA8 337 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 TBC1D15Q8TC07 691 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 PHYHIPQ92561 330 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 SLC25A46Q96AG3 418 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 ZFP3Q96NJ6 502 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 NOX3Q9HBY0 568 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 BRD7Q9NPI1 651 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 SNTG1Q9NSN8 517 aa12.46□□□□□ -0.42
USP39-220ENST00000613444 TRBV5-7A0A0A0MS05 114 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 C5orf63A6NC05 138 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PRRG2O14669 202 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 HLA-HP01893 362 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 SLC2A1P11166 492 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 EDN3P14138 238 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 COX5AP20674 150 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 MTNR1BP49286 362 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PER3P56645 1201 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 GALK2Q01415 458 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 LY6DQ14210 128 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 BCL2L15Q5TBC7 163 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 ZNF544Q6NX49 715 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PAMR1Q6UXH9 720 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 CPEB3Q8NE35 698 aaKnown RBP12.45□□□□□ -0.42
USP39-220ENST00000613444 GPR148Q8TDV2 347 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 ORAI1Q96D31 301 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 TPK1Q9H3S4 243 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 MOB1AQ9H8S9 216 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 NOX4Q9NPH5 578 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 SLC17A5Q9NRA2 495 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 TINAGQ9UJW2 476 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PCNX1Q96RV3 2341 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PRR14LQ5THK1 2151 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 USP24Q9UPU5 2620 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 H3BSH0 61 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 IL2RAP01589 272 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 ACSM4P0C7M7 580 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 SFTPCP11686 197 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 HGFACQ04756 655 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 EIF2S3LQ2VIR3 472 aaKnown RBP12.45□□□□□ -0.42
USP39-220ENST00000613444 SLC36A2Q495M3 483 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 HIKESHIQ53FT3 197 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 PABPC1L2AQ5JQF8 200 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 OR8B12Q8NGG6 310 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 BOD1Q96IK1 185 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 B3GNT2Q9NY97 397 aa12.45□□□□□ -0.42
USP39-220ENST00000613444 TRAV1-2A0A0B4J238 106 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 SMIM30A4D0T7 59 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 F5H5K5 113 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 OCM2P0CE71 109 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 CAV3P56539 151 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 ECH1Q13011 328 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 SFRP5Q5T4F7 317 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 ASPHD2Q6ICH7 369 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 ZNF704Q6ZNC4 412 aaPredicted RBP12.44□□□□□ -0.42
USP39-220ENST00000613444 ZNF433Q8N7K0 673 aaPredicted RBP12.44□□□□□ -0.42
USP39-220ENST00000613444 ZNF283Q8N7M2 679 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 ZNF610Q8N9Z0 462 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 ASB5Q8WWX0 329 aa12.44□□□□□ -0.42
USP39-220ENST00000613444 OPN3Q9H1Y3 402 aaPredicted RBP12.44□□□□□ -0.42
USP39-220ENST00000613444 PLEKHB1Q9UF11 243 aaPredicted RBP12.44□□□□□ -0.42
USP39-220ENST00000613444 A0A1B0GTI1 187 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 LOC107986453A0A1B0GWG9 222 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 TTLL8A6PVC2 850 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 M0R135 149 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ERVH48-1M5A8F1 160 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 CASKO14936 926 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 KALRNO60229 2985 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 IGLV3-1P01715 115 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 UBCP0CG48 685 aaKnown RBP12.43□□□□□ -0.42
USP39-220ENST00000613444 ACHEP22303 614 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 SOX2P48431 317 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 RORCP51449 518 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 TBRG1Q3YBR2 411 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ZNF404Q494X3 552 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 CEP78Q5JTW2 689 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ZNF799Q96GE5 643 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ZNF75AQ96N20 296 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 PROCRQ9UNN8 238 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 A3GALT2U3KPV4 340 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 A0A0G2JK05 382 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 P2RY10O00398 339 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 ARL6IP5O75915 188 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 LYZL6O75951 148 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 NCR1O76036 304 aa12.43□□□□□ -0.42
USP39-220ENST00000613444 HTR5AP47898 357 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms