RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 DCTN6O00399 190 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 ARPC3O15145 178 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 CYB5R3P00387 301 aaPredicted RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 FSHBP01225 129 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SEMG1P04279 462 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 HSD17B1P14061 328 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 IRF2P14316 349 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 RPS2P15880 293 aaKnown RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 HIST1H1CP16403 213 aaKnown RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 ZNF12P17014 697 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 RRM2P31350 389 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 RBMXP38159 391 aaKnown RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 SLC6A9P48067 706 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SEC61A1P61619 476 aaKnown RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 HIST1H3AP68431 136 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 ECH1Q13011 328 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 MALLQ13021 153 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SAMD4BQ5PRF9 694 aaKnown RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 HIST2H3PS2Q5TEC6 136 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 BTNL3Q6UXE8 466 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 HIST2H3AQ71DI3 136 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 CPLX4Q7Z7G2 160 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 LINC00346Q8IVM7 164 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 C1orf87Q8N0U7 546 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 PGAM4Q8N0Y7 254 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 OR6V1Q8N148 313 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 DEFB108BQ8NET1 73 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SDR9C7Q8NEX9 313 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SLC26A10Q8NG04 563 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 OR52L1Q8NGH7 329 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 OR4K13Q8NH42 304 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 ZNF420Q8TAQ5 688 aaPredicted RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 ATF6BQ99941 703 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SLC30A2Q9BRI3 323 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 FUZQ9BT04 418 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 SSBP3Q9BWW4 388 aaPredicted RBP8.24□□□□□ -1.09
VRK3-216ENST00000599342 WDR76Q9H967 626 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 MMP26Q9NRE1 261 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 NUP50Q9UKX7 468 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 LRCH1Q9Y2L9 728 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 PPIAL4AQ9Y536 164 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 INSIG2Q9Y5U4 225 aa8.24□□□□□ -1.09
VRK3-216ENST00000599342 ANK2Q01484 3957 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 F5H5P2 479 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 TRAPPC2LH3BP13 241 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ARPC2O15144 300 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 MLNRO43193 412 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 IDH3BO43837 385 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 SNX3O60493 162 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ZNF823P16415 610 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 CPT2P23786 658 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 RAD23AP54725 363 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 GNB2P62879 340 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 UBA52P62987 128 aaKnown RBP8.23□□□□□ -1.09
VRK3-216ENST00000599342 MXRA7P84157 204 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 TRAP1Q12931 704 aaKnown RBP8.23□□□□□ -1.09
VRK3-216ENST00000599342 ZNF181Q2M3W8 571 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 SLC18B1Q6NT16 456 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 RPL13AP3Q6NVV1 102 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 C16orf89Q6UX73 402 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ZNF620Q6ZNG0 422 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 CFAP77Q6ZQR2 320 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 NLRC3Q7RTR2 1065 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ZBTB46Q86UZ6 589 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 MOGAT3Q86VF5 341 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ZDHHC22Q8N966 263 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 OR52E2Q8NGJ4 325 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 GNPDA2Q8TDQ7 276 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 PLEKHA8Q96JA3 519 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 C1QTNF5Q9BXJ0 243 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 PLA2G12AQ9BZM1 189 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 MS4A7Q9GZW8 240 aaPredicted RBP8.23□□□□□ -1.09
VRK3-216ENST00000599342 FN3KQ9H479 309 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 IL1RAPQ9NPH3 570 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 ESM1Q9NQ30 184 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 TMEM100Q9NV29 134 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 NDE1Q9NXR1 346 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 MIOXQ9UGB7 285 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 NOP16Q9Y3C1 178 aaKnown RBP8.23□□□□□ -1.09
VRK3-216ENST00000599342 DYSFO75923 2080 aa8.23□□□□□ -1.09
VRK3-216ENST00000599342 IGHV3-64DA0A0J9YX35 117 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 OR6C68A6NDL8 312 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 H0YL77 283 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 ATP8B1O43520 1251 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 ZNF205O95201 554 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 LCATP04180 440 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 HLA-DPB1P04440 258 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 ACSM4P0C7M7 580 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 MSX2P35548 267 aaPredicted RBP8.22□□□□□ -1.09
VRK3-216ENST00000599342 TPTEP56180 551 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 PRSS12P56730 875 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.22□□□□□ -1.09
VRK3-216ENST00000599342 TSPAN31Q12999 210 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 GK2Q14410 553 aaPredicted RBP8.22□□□□□ -1.09
VRK3-216ENST00000599342 AWAT1Q58HT5 328 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 CLEC12AQ5QGZ9 265 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 SLC35F1Q5T1Q4 408 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 LRRN1Q6UXK5 716 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 COLCA1Q6ZS62 124 aa8.22□□□□□ -1.09
VRK3-216ENST00000599342 PGAP1Q75T13 922 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms