RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PCDHGB1Q9Y5G3 927 aa12.37□□□□□ -0.43
VRK3-213ENST00000597215 H3BSA7 217 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 NGFP01138 241 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 DANCRP0C864 163 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 TUBG1P23258 451 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 SERPINF1P36955 418 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 SLC6A9P48067 706 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 PRKXP51817 358 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 CXCR4P61073 352 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 ACTC1P68032 377 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 ACTA1P68133 377 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 SNCBQ16143 134 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 DEGS2Q6QHC5 323 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 ZNF322Q6U7Q0 402 aaPredicted RBP12.36□□□□□ -0.43
VRK3-213ENST00000597215 LRRN1Q6UXK5 716 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.36□□□□□ -0.43
VRK3-213ENST00000597215 ZNF283Q8N7M2 679 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 OR10H4Q8NGA5 316 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 OR5L1Q8NGL2 311 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 MRPL24Q96A35 216 aaKnown RBP12.36□□□□□ -0.43
VRK3-213ENST00000597215 APOBEC3DQ96AK3 386 aaPredicted RBP12.36□□□□□ -0.43
VRK3-213ENST00000597215 TBX5Q99593 518 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 TRAF4Q9BUZ4 470 aaPredicted RBP12.36□□□□□ -0.43
VRK3-213ENST00000597215 C1QTNF5Q9BXJ0 243 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 NIPAL2Q9H841 368 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 TUBG2Q9NRH3 451 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 CBLN4Q9NTU7 201 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 LAMP3Q9UQV4 416 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 LRBAP50851 2863 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 SPG11Q96JI7 2443 aa12.36□□□□□ -0.43
VRK3-213ENST00000597215 A0A1W2PQL4 384 aaPredicted RBP12.35□□□□□ -0.43
VRK3-213ENST00000597215 ZNF254O75437 659 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 LCATP04180 440 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SOD3P08294 240 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 CD53P19397 219 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 DNASE1P24855 282 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 CX3CR1P49238 355 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SELENOVP59797 346 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 ERVS71-1P61550 626 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 ROM1Q03395 351 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 EGR3Q06889 387 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 RAB40BQ12829 278 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 CDK5R2Q13319 367 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 EFNB3Q15768 340 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SMN1Q16637 294 aaKnown RBP12.35□□□□□ -0.43
VRK3-213ENST00000597215 ZNF718Q3SXZ3 478 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 KLHL22Q53GT1 634 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SPATA46Q5T0L3 261 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 COLCA1Q6ZS62 124 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 CDH24Q86UP0 819 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 ZNF679Q8IYX0 411 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 RFLNBQ8N5W9 214 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SYNPRQ8TBG9 265 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SLC25A40Q8TBP6 338 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 FBLIM1Q8WUP2 373 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 NINJ1Q92982 152 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 PIGTQ969N2 578 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 LGALS12Q96DT0 336 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 OR8B4Q96RC9 309 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 DOK1Q99704 481 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 MROQ9BYG7 248 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 ANKRD60Q9BZ19 345 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 TTTY10Q9BZA0 68 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 PLK3Q9H4B4 646 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 SP140LQ9H930 580 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 AMBNQ9NP70 447 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 MRPS18AQ9NVS2 196 aaKnown RBP12.35□□□□□ -0.43
VRK3-213ENST00000597215 IKZF2Q9UKS7 526 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 EXOGQ9Y2C4 368 aaKnown RBP12.35□□□□□ -0.43
VRK3-213ENST00000597215 PLEKHA6Q9Y2H5 1048 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 LRP12Q9Y561 859 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 TACC2O95359 2948 aa12.35□□□□□ -0.43
VRK3-213ENST00000597215 ITPR2Q14571 2701 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 IRGMA1A4Y4 181 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 CYSRT1A8MQ03 144 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 B9A039 149 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 J3QRE1 110 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 ATE1O95260 518 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 FADS2O95864 444 aaKnown RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 BMP4P12644 408 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 ZNF250P15622 560 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 GCH1P30793 250 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 EVX1P49640 407 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 RIDAP52758 137 aaKnown RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 KLF3P57682 345 aaPredicted RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 SNRPD2P62316 118 aaKnown RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 MSMPQ1L6U9 139 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 C11orf71Q6IPW1 123 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 MARS2Q96GW9 593 aaKnown RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 ZNF184Q99676 751 aaPredicted RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 MRPL37Q9BZE1 423 aaKnown RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 OR2J1Q9GZK6 312 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 CXorf56Q9H5V9 222 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 SLCO1C1Q9NYB5 712 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 DUSP13Q9UII6 198 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 FBXO9Q9UK97 447 aaPredicted RBP12.34□□□□□ -0.43
VRK3-213ENST00000597215 RAB26Q9ULW5 256 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 FZR1Q9UM11 496 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 STARD10Q9Y365 291 aa12.34□□□□□ -0.43
VRK3-213ENST00000597215 DAPL1A0PJW8 107 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms