RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 TUBG1P23258 451 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 RRM2P31350 389 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 MTNR1AP48039 350 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 HMGA2P52926 109 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 MXRA7P84157 204 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 MS4A2Q01362 244 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 ZNF770Q6IQ21 691 aaPredicted RBP12.38□□□□□ -0.43
PNKP-202ENST00000593706 BTNL3Q6UXE8 466 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 TREML4Q6UXN2 200 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 CYP2R1Q6VVX0 501 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 Q6ZR03 302 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 LRRC28Q86X40 367 aaPredicted RBP12.38□□□□□ -0.43
PNKP-202ENST00000593706 ZDHHC21Q8IVQ6 265 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 OR52E2Q8NGJ4 325 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 OR4C15Q8NGM1 316 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 FANK1Q8TC84 345 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 COG8Q96MW5 612 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 SIGLEC11Q96RL6 698 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 SSBP3Q9BWW4 388 aaPredicted RBP12.38□□□□□ -0.43
PNKP-202ENST00000593706 NDEL1Q9GZM8 345 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 SYT4Q9H2B2 425 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 KRCC1Q9NPI7 259 aaPredicted RBP12.38□□□□□ -0.43
PNKP-202ENST00000593706 TUBG2Q9NRH3 451 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 LYVE1Q9Y5Y7 322 aa12.38□□□□□ -0.43
PNKP-202ENST00000593706 PRKDCP78527 4128 aaKnown RBP12.38□□□□□ -0.43
PNKP-202ENST00000593706 TRAV40A0A0B4J280 105 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 CEACAM18A8MTB9 384 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 XKRYO14609 159 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 ARPC3O15145 178 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 KITLGP21583 273 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 CDKN2AP42771 156 aaKnown RBP12.37□□□□□ -0.43
PNKP-202ENST00000593706 MMP16P51512 607 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 TUSC1Q2TAM9 212 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 PGBD2Q6P3X8 592 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 ZNF620Q6ZNG0 422 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 VASH1Q7L8A9 365 aaPredicted RBP12.37□□□□□ -0.43
PNKP-202ENST00000593706 OR5AS1Q8N127 324 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 OR10AD1Q8NGE0 317 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 MCUR1Q96AQ8 359 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 CMBLQ96DG6 245 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 BTBD10Q9BSF8 475 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 WACQ9BTA9 647 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 MUC13Q9H3R2 512 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 MAGIXQ9H6Y5 334 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 TAS2R1Q9NYW7 299 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 AURKCQ9UQB9 309 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 IER3IP1Q9Y5U9 82 aa12.37□□□□□ -0.43
PNKP-202ENST00000593706 IGLV1-36A0A0B4J1U3 117 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 POM121CA8CG34 1229 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 TMEM178BH3BS89 294 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 DCTN6O00399 190 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 SOCS2O14508 198 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 PPP1R3DO95685 299 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 GPANK1O95872 356 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 IGHV4-38-2P0DP08 117 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 GNB2P62879 340 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 DEFA6Q01524 100 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 AQP6Q13520 282 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 TRIM25Q14258 630 aaKnown RBP12.36□□□□□ -0.43
PNKP-202ENST00000593706 SLC9A3R2Q15599 337 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 KCNMB1Q16558 191 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 RFX4Q33E94 735 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 LEG1Q6P5S2 330 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 SPATC1Q76KD6 591 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 JAZF1Q86VZ6 243 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 ATG16L2Q8NAA4 619 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 SLC7A6Q92536 515 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 NUAK2Q9H093 628 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 C1orf21Q9H246 121 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 OR52D1Q9H346 318 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 RERGLQ9H628 205 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 GCM1Q9NP62 436 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 VNN3Q9NY84 501 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 PRPF19Q9UMS4 504 aaKnown RBP12.36□□□□□ -0.43
PNKP-202ENST00000593706 STARD10Q9Y365 291 aa12.36□□□□□ -0.43
PNKP-202ENST00000593706 CLDN34H7C241 214 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 IFNL4K9M1U5 179 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 ACOT8O14734 319 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 OR10H3O60404 316 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 SLC16A7O60669 478 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 KRT36O76013 467 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 ZNF205O95201 554 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 CD80P33681 288 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 ERFP50548 548 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 RPS6KA3P51812 740 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 DBPQ10586 325 aaPredicted RBP12.35□□□□□ -0.43
PNKP-202ENST00000593706 TSPAN31Q12999 210 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 PDLIM3Q53GG5 364 aaPredicted RBP12.35□□□□□ -0.43
PNKP-202ENST00000593706 OTPQ5XKR4 325 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 SLC27A4Q6P1M0 643 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 LRRN1Q6UXK5 716 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 GLB1L2Q8IW92 636 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 ZNF420Q8TAQ5 688 aaPredicted RBP12.35□□□□□ -0.43
PNKP-202ENST00000593706 TAF15Q92804 592 aaKnown RBP eCLIP12.35□□□□□ -0.43
PNKP-202ENST00000593706 HAVCR1Q96D42 359 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 ASB9Q96DX5 294 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 PLEKHA8Q96JA3 519 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 CLPTM1LQ96KA5 538 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 TSSK2Q96PF2 358 aa12.35□□□□□ -0.43
PNKP-202ENST00000593706 TRIM15Q9C019 465 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms