RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TM4SF5O14894 197 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ERCC1P07992 297 aaPredicted RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 RFC3P40938 356 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 NOVA1P51513 510 aaKnown RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 PRKXP51817 358 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ZNF121P58317 390 aaPredicted RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 ECH1Q13011 328 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 SLC10A1Q14973 349 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 NRN1LQ496H8 165 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ZNF766Q5HY98 468 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ELFN2Q5R3F8 820 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 TMEM69Q5SWH9 247 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ATP1A1-AS1Q5TC04 95 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ASPHD2Q6ICH7 369 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CELF2-AS1Q8N7Q2 184 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 DRAXINQ8NBI3 349 aaPredicted RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 SPTSSAQ969W0 71 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 SLC6A15Q9H2J7 730 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 ZNF552Q9H707 407 aaPredicted RBP12.51□□□□□ -0.41
LIG3-205ENST00000585941 RNF121Q9H920 327 aa12.51□□□□□ -0.41
LIG3-205ENST00000585941 CNOT1A5YKK6 2376 aaKnown RBP12.5□□□□□ -0.41
LIG3-205ENST00000585941 LOC390937A0A1W2PQ73 354 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 GABARAPH6UMI1 98 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 ITGA5P08648 1049 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 CELA3AP09093 270 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 CCL1P22362 96 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 HTR2CP28335 458 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 DDOSTP39656 456 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 KIR2DL3P43628 341 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 PCBD1P61457 104 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 SCRN3Q0VDG4 424 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 C1orf100Q5SVJ3 147 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 AGAP6Q5VW22 663 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 ANKRD16Q6P6B7 361 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 PGAP1Q75T13 922 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 DOK3Q7L591 496 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 VASH2Q86V25 355 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 TOMM5Q8N4H5 51 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 YIPF5Q969M3 257 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 PHF21AQ96BD5 680 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 FAM3DQ96BQ1 224 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 FGGYQ96C11 551 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 LINC00470Q9BZP3 86 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 PLEKHA1Q9HB21 404 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 CRLF2Q9HC73 371 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 DIABLOQ9NR28 239 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 TMEM38BQ9NVV0 291 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 NOSIPQ9Y314 301 aaKnown RBP12.5□□□□□ -0.41
LIG3-205ENST00000585941 ZNF292O60281 2723 aa12.5□□□□□ -0.41
LIG3-205ENST00000585941 A0A0U1RQV5 110 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 A0A1B0GTI1 187 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 NKX2-8O15522 239 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 MRPL33O75394 65 aaKnown RBP12.49□□□□□ -0.41
LIG3-205ENST00000585941 ECDO95905 644 aaPredicted RBP12.49□□□□□ -0.41
LIG3-205ENST00000585941 ZNF20P17024 532 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 BDKRB2P30411 391 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 OTX1P32242 354 aaPredicted RBP12.49□□□□□ -0.41
LIG3-205ENST00000585941 AP3S2P59780 193 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 DYRK1AQ13627 763 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 RTP5Q14D33 572 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 RAB35Q15286 201 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 RNPS1Q15287 305 aaKnown RBP12.49□□□□□ -0.41
LIG3-205ENST00000585941 LINGO2Q7L985 606 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 AKAP14Q86UN6 197 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 CDH26Q8IXH8 852 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 DTX3Q8N9I9 347 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 PLPP7Q8NBV4 271 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 OR8B12Q8NGG6 310 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 OR51E1Q8TCB6 317 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 ABHD3Q8WU67 409 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 FCAMRQ8WWV6 532 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 PTX4Q96A99 478 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 ZNF845Q96IR2 970 aaPredicted RBP12.49□□□□□ -0.41
LIG3-205ENST00000585941 SORCS2Q96PQ0 1159 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 TMEM138Q9NPI0 162 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 CACNG2Q9Y698 323 aa12.49□□□□□ -0.41
LIG3-205ENST00000585941 ZNF891A8MT65 544 aaPredicted RBP12.48□□□□□ -0.41
LIG3-205ENST00000585941 ZNF724A8MTY0 619 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 XRCC3O43542 346 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 TRAPPC2P0DI81 140 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 TRAPPC2BP0DI82 140 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 RAB3AP20336 220 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 CDK2P24941 298 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 GNALP38405 381 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 PTH2RP49190 550 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 POU3F4P49335 361 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 TNFSF10P50591 281 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 DGCR2P98153 550 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 C2orf76Q3KRA6 126 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 SLC36A2Q495M3 483 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 CCDC92Q53HC0 331 aaPredicted RBP12.48□□□□□ -0.41
LIG3-205ENST00000585941 GLYATL3Q5SZD4 288 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ZNF529Q6P280 563 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 IGFL2Q6UWQ7 119 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 CHMP1BQ7LBR1 199 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 KRT74Q7RTS7 529 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 ABHD12BQ7Z5M8 362 aaPredicted RBP12.48□□□□□ -0.41
LIG3-205ENST00000585941 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.48□□□□□ -0.41
LIG3-205ENST00000585941 COMMD2Q86X83 199 aa12.48□□□□□ -0.41
LIG3-205ENST00000585941 LRRC18Q8N456 261 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms