RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TRBV11-1A0A0K0K1C0 115 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 CENPVL3A0A0U1RRI6 287 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 C9JVG2 144 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SMKR1H3BMG3 65 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 LGALS9O00182 355 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC22A5O76082 557 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SEMA3DO95025 777 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 OXTP01178 125 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 FTH1P02794 183 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 IGKV4-1P06312 121 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 FGF4P08620 206 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 U2AF2P26368 475 aaKnown RBP eCLIP2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 RRM2P31350 389 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 OTX1P32242 354 aaPredicted RBP2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 CRISP1P54107 249 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SYNJ2BPP57105 145 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 EIF3EP60228 445 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 RPS15P62841 145 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 CDK5Q00535 292 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC39A6Q13433 755 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 C1orf185Q5T7R7 199 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 REEP3Q6NUK4 255 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 MRPL55Q7Z7F7 128 aaKnown RBP2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 CMTM1Q8IZ96 169 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 MIR7-3HGQ8N6C7 128 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 NPWQ8N729 165 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 PQLC3Q8N755 202 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 SLC38A4Q969I6 547 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 ECHDC3Q96DC8 303 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 VPS37BQ9H9H4 285 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 ZNF160Q9HCG1 818 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 TSPOAP1O95153 1857 aa2.28□□□□□ -2.04
SMCHD1-204ENST00000581226 TRIOBPQ9H2D6 2365 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 TRBV9A0A0B4J1U6 114 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 H7C417 338 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 SIRPB1O00241 398 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 NVLO15381 856 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 CDH16O75309 829 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 AGTP01019 485 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 KRT14P02533 472 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 ARG1P05089 322 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 TPM2P07951 284 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 ATF6P18850 670 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 GALP22466 123 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 ME2P23368 584 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 ATP5OP48047 213 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 SP4Q02446 784 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 RCN1Q15293 331 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 RNASE13Q5GAN3 156 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 ADNP2Q6IQ32 1131 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 NPSR1Q6W5P4 371 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 SLC16A14Q7RTX9 510 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 CMC1Q7Z7K0 106 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 NKAIN4Q8IVV8 208 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 CCDC148Q8NFR7 591 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 OR4C5Q8NGB2 326 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 OR11H7Q8NGC8 314 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 OR52E2Q8NGJ4 325 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 OR4A4PQ8NGN8 299 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 DCPSQ96C86 337 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 RBBP8Q99708 897 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 BPIFA3Q9BQP9 254 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 RSG1Q9BU20 258 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 FAM192AQ9GZU8 254 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 EXOSC4Q9NPD3 245 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 C8orf17Q9NRJ1 99 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 PTTG3PQ9NZH4 202 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 CCDC59Q9P031 241 aaKnown RBP2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 MTFP1Q9UDX5 166 aa2.27□□□□□ -2.05
SMCHD1-204ENST00000581226 A0A075B6Q4 140 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 TEX46H3BTG2 121 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 K7EMT4 169 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CLDN11O75508 207 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 SERPINE2P07093 398 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CT45A6P0DMU7 189 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CT45A5P0DMU8 189 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CT45A7P0DMV0 189 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CD37P11049 281 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CCNG1P51959 295 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 RAB10P61026 200 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 RPS23P62266 143 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 PRR3P79522 188 aaKnown RBP2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 IRF8Q02556 426 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 LIPEQ05469 1076 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 ITIH4Q14624 930 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 KIR2DS1Q14954 304 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 PSMD5Q16401 504 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 HSDL1Q3SXM5 330 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CT45A1Q5HYN5 189 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 SPANXN2Q5MJ10 180 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 C22orf42Q6IC83 251 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CLEC2AQ6UVW9 174 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 LINC00304Q8N9R0 145 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 TTLQ8NG68 377 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 OR52K2Q8NGK3 314 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 CT45A3Q8NHU0 189 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 NUBPLQ8TB37 319 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 APH1BQ8WW43 257 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 C20orf24Q9BUV8 137 aa2.26□□□□□ -2.05
SMCHD1-204ENST00000581226 TMEM165Q9HC07 324 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms