RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PPP3CBP16298 524 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 AGAP20933 346 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 CRYBB2P43320 205 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 HTR5AP47898 357 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 HIKESHIQ53FT3 197 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 ZNF774Q6NX45 483 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 ARL9Q6T311 187 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 ELMOD2Q8IZ81 293 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 IL17RDQ8NFM7 739 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 OR1J2Q8NGS2 313 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 HTRA1Q92743 480 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 ISOC1Q96CN7 298 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 ZNF799Q96GE5 643 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 RGCCQ9H4X1 137 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 G6PC2Q9NQR9 355 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 CRNNQ9UBG3 495 aaPredicted RBP13.32□□□□□ -0.28
SS18-215ENST00000580642 SH3BGRL2Q9UJC5 107 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 OR52A1Q9UKL2 312 aa13.32□□□□□ -0.28
SS18-215ENST00000580642 SIRT4Q9Y6E7 314 aaPredicted RBP13.32□□□□□ -0.28
SS18-215ENST00000580642 CACNA1BQ00975 2339 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ZGRF1Q86YA3 2104 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 A0A0U1RQV5 110 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 TRIM64BA6NI03 449 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 EEF1E1-BLOC1S5C9J1V9 151 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 EEF1E1O43324 174 aaKnown RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 ICMTO60725 284 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 SC5DO75845 299 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 RGS9O75916 674 aaPredicted RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 ZFPL1O95159 310 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 IGKV3-15P01624 115 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 RAF1P04049 648 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ZNF12P17014 697 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 GADD45AP24522 165 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 MAPK3P27361 379 aaPredicted RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 PSMB10P40306 273 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 CX3CR1P49238 355 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ASCL1P50553 236 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 NANOS3P60323 173 aaKnown RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 SLC3A1Q07837 685 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 MRPL49Q13405 166 aaKnown RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 CTF1Q16619 201 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 RSPO1Q2MKA7 263 aaPredicted RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 C4orf17Q53FE4 359 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 WDR38Q5JTN6 314 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 BCL2L15Q5TBC7 163 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 SLC16A12Q6ZSM3 486 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 SPATC1Q76KD6 591 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 PRSS45Q7RTY3 260 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 C1orf174Q8IYL3 243 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 PRSS35Q8N3Z0 413 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ZNF283Q8N7M2 679 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ZNF676Q8N7Q3 588 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 WDR31Q8NA23 367 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 RELL2Q8NC24 303 aaPredicted RBP13.31□□□□□ -0.28
SS18-215ENST00000580642 LILRB4Q8NHJ6 448 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 FGFBP3Q8TAT2 258 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ABHD4Q8TB40 342 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 GPR148Q8TDV2 347 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 HSD17B8Q92506 261 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 ZNF75AQ96N20 296 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 GRIP1Q9Y3R0 1128 aa13.31□□□□□ -0.28
SS18-215ENST00000580642 RP1L1Q8IWN7 2480 aaPredicted RBP13.3□□□□□ -0.28
SS18-215ENST00000580642 CCDC160A6NGH7 325 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 C16orf97H3BN30 126 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ARL6IP5O75915 188 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 PNPP00491 289 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ACSM4P0C7M7 580 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ACHEP22303 614 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 TUBG1P23258 451 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 STOMP27105 288 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 APLNRP35414 380 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ZNF121P58317 390 aaPredicted RBP13.3□□□□□ -0.28
SS18-215ENST00000580642 TLE1Q04724 770 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 UNQ6126/PRO20091Q6UXV3 157 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 COLCA1Q6ZS62 124 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 LUZP2Q86TE4 346 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 LIX1LQ8IVB5 337 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ZFP41Q8N8Y5 198 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 CPEB3Q8NE35 698 aaKnown RBP13.3□□□□□ -0.28
SS18-215ENST00000580642 AKR7LQ8NHP1 331 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 MUCL1Q96DR8 90 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 PBOV1Q9GZY1 135 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 TUBG2Q9NRH3 451 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 ERRFI1Q9UJM3 462 aaPredicted RBP13.3□□□□□ -0.28
SS18-215ENST00000580642 HHLA2Q9UM44 414 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 FREM1Q5H8C1 2179 aa13.3□□□□□ -0.28
SS18-215ENST00000580642 COL6A6A6NMZ7 2263 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 F5H5K5 113 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 H3BMQ9 156 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 IGLV1-44P01699 117 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 PATE4P0C8F1 98 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 ZNF14P17017 642 aaPredicted RBP13.29□□□□□ -0.28
SS18-215ENST00000580642 CCL1P22362 96 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 CFL1P23528 166 aaKnown RBP13.29□□□□□ -0.28
SS18-215ENST00000580642 UGT2B10P36537 528 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 KIR3DL2P43630 455 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 PRKXP51817 358 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 RPS25P62851 125 aaKnown RBP13.29□□□□□ -0.28
SS18-215ENST00000580642 TUBA1BP68363 451 aa13.29□□□□□ -0.28
SS18-215ENST00000580642 GALK2Q01415 458 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms