RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ACSF3Q4G176 576 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 AGKQ53H12 422 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 PRAMEF8Q5VWM4 474 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 PRAMEF7Q5VXH5 474 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 GPR139Q6DWJ6 353 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 TNFAIP8L2Q6P589 184 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 ARSKQ6UWY0 536 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 LRRC74BQ6ZQY2 392 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 GRAMD2AQ8IUY3 354 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 UBQLNLQ8IYU4 475 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 CLEC4FQ8N1N0 589 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF619Q8N2I2 560 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 GTPBP8Q8N3Z3 284 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 TMCO5AQ8N6Q1 288 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 OR5W2Q8NH69 310 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF563Q8TA94 476 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZFP90Q8TF47 636 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ST8SIA1Q92185 356 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 RAB8BQ92930 207 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 VPS33AQ96AX1 596 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 OTUB1Q96FW1 271 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF486Q96H40 463 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 SH3YL1Q96HL8 342 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 TEX37Q96LM6 180 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 MUS81Q96NY9 551 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 EBF4Q9BQW3 602 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 NUDT16L1Q9BRJ7 211 aaKnown RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 SLC39A3Q9BRY0 314 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 INPP5KQ9BT40 448 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 THUMPD3Q9BV44 507 aaKnown RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 SFXN3Q9BWM7 321 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF350Q9GZX5 532 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 MED20Q9H944 212 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 TPT1P8Q9HAU6 139 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 CDH20Q9HBT6 801 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 EXOSC3Q9NQT5 275 aaKnown RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 MED17Q9NVC6 651 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF446Q9NWS9 450 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 LEF1Q9UJU2 399 aaPredicted RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 MCTS1Q9ULC4 181 aaKnown RBP3.29□□□□□ -1.88
NUP88-202ENST00000570937 RNF150Q9ULK6 438 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 IFT52Q9Y366 437 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF337Q9Y3M9 751 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 ZNF175Q9Y473 711 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 LIPGQ9Y5X9 500 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 CROCCQ5TZA2 2017 aa3.29□□□□□ -1.88
NUP88-202ENST00000570937 RELNP78509 3460 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 ASH1LQ9NR48 2969 aaKnown RBP3.28□□□□□ -1.88
NUP88-202ENST00000570937 SHANK1Q9Y566 2161 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 TRBV5-5A0A0J9YX44 114 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CFAP73A6NFT4 308 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 BBIP1A8MTZ0 92 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 C9JVG2 144 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 NPIPB9F8W1W9 429 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 DYNC1I1O14576 645 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CASKO14936 926 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 KIAA0513O60268 411 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 UGT2B17O75795 530 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 TOXO94900 526 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 H6PDO95479 791 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 IFNA14P01570 189 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 TFPTP0C1Z6 253 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 UBTFL6P0CB48 400 aaPredicted RBP3.28□□□□□ -1.88
NUP88-202ENST00000570937 ETS2P15036 469 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 IL11P20809 199 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 PRKACGP22612 351 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CXCR1P25024 350 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CDKN2CP42773 168 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 SLC1A3P43003 542 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 STARP49675 285 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 LHX2P50458 406 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CTBP2P56545 445 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 TMEM50BP56557 158 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CLDN18P56856 261 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 ZNF117Q03924 483 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 SKP2Q13309 424 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 PON3Q15166 354 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 QPRTQ15274 297 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 RGNQ15493 299 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 NPTX1Q15818 432 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CYP51A1Q16850 503 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 TMEM44Q2T9K0 475 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 PLPPR5Q32ZL2 321 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 LIN52Q52LA3 116 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 COQ5Q5HYK3 327 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 ZNF311Q5JNZ3 666 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 C9orf152Q5JTZ5 239 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.28□□□□□ -1.88
NUP88-202ENST00000570937 PDZK1Q5T2W1 519 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 HBMQ6B0K9 141 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 RTL6Q6ICC9 239 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 OR4A47Q6IF82 309 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 REEP3Q6NUK4 255 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 C3orf33Q6P1S2 294 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 PAQR6Q6TCH4 344 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 APOOLQ6UXV4 268 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 ZNF550Q7Z398 422 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 GRINAQ7Z429 371 aa3.28□□□□□ -1.88
NUP88-202ENST00000570937 CENPVQ7Z7K6 275 aaPredicted RBP3.28□□□□□ -1.88
NUP88-202ENST00000570937 CATSPERDQ86XM0 798 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms