RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CELA3AP09093 270 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SFTPCP11686 197 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 FSTP19883 344 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 TNFSF8P32971 234 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 PSMB10P40306 273 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 RFC3P40938 356 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 NR4A2P43354 598 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 NANOS3P60323 173 aaKnown RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 RAB35Q15286 201 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 KIF26BQ2KJY2 2108 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 WDR38Q5JTN6 314 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 GLT8D1Q68CQ7 371 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 OR7E24Q6IFN5 339 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SFXN4Q6P4A7 337 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 XKRXQ6PP77 449 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 C20orf204Q6ZNR8 217 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 PGAP1Q75T13 922 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 DOK3Q7L591 496 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SLC16A14Q7RTX9 510 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 ZSCAN2Q7Z7L9 614 aaPredicted RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 CCDC190Q86UF4 302 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SERPINA12Q8IW75 414 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SPACA3Q8IXA5 215 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SLC22A24Q8N4F4 322 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 RFLNBQ8N5W9 214 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 NKAIN3Q8N8D7 197 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 OR5D14Q8NGL3 314 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SETD6Q8TBK2 473 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 SNRNP27Q8WVK2 155 aaKnown RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 TSEN15Q8WW01 171 aaKnown RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 CPNE2Q96FN4 548 aaPredicted RBP7.02□□□□□ -1.29
VPS39-213ENST00000570062 OR14A2Q96R54 314 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 KCNS3Q9BQ31 491 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 PDCD1LG2Q9BQ51 273 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 ZNF416Q9BWM5 594 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 BARHL1Q9BZE3 327 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 RNF167Q9H6Y7 350 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 GPR35Q9HC97 309 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 NOX4Q9NPH5 578 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 GTF2A1LQ9UNN4 478 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 WASF3Q9UPY6 502 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 ETV7Q9Y603 341 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 LHFPL6Q9Y693 200 aa7.02□□□□□ -1.29
VPS39-213ENST00000570062 IGKV1D-43A0A0B4J1Z2 117 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 LOC390937A0A1W2PQ73 354 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ANXA2P2A6NMY6 339 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 H0YC42 278 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 J3QW42 95 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 AIPO00170 330 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PSMD9O00233 223 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 MAGEB3O15480 346 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 MAGEB4O15481 346 aaPredicted RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 SGCEO43556 437 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 SYT7O43581 403 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 WDR1O75083 606 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 SRSF10O75494 262 aaKnown RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 ALX3O95076 343 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 APOA1P02647 267 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ANXA2P07355 339 aaKnown RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 MPGP29372 298 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 TGFBR1P36897 503 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PLP2Q04941 152 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 RIN1Q13671 783 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 RGS21Q2M5E4 152 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 CEACAM16Q2WEN9 425 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 IDNKQ5T6J7 187 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 FBXW9Q5XUX1 488 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 TMEM53Q6P2H8 277 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 FAM180AQ6UWF9 173 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 UNQ6126/PRO20091Q6UXV3 157 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ZNF813Q6ZN06 617 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 SSX8Q7RTT4 187 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ADGRE4PQ86SQ3 457 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 LINC00346Q8IVM7 164 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PRSS35Q8N3Z0 413 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PARP16Q8N5Y8 322 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ZNF283Q8N7M2 679 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 IL17RDQ8NFM7 739 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ZNF671Q8TAW3 534 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 FNDC9Q8TBE3 224 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ABHD3Q8WU67 409 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ASB5Q8WWX0 329 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 RAB40AQ8WXH6 277 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 RELTQ969Z4 430 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 TMEM106AQ96A25 262 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 NABP1Q96AH0 204 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 DIRAS2Q96HU8 199 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 BOD1Q96IK1 185 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ZNF845Q96IR2 970 aaPredicted RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 AMELYQ99218 206 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PBOV1Q9GZY1 135 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 OR10A2Q9H208 303 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 OPA3Q9H6K4 179 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 EMC7Q9NPA0 242 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 G6PC2Q9NQR9 355 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 ZNF275Q9NSD4 429 aaPredicted RBP7.01□□□□□ -1.29
VPS39-213ENST00000570062 FAM206AQ9NX38 181 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 PLEK2Q9NYT0 353 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 SPATA2Q9UM82 520 aa7.01□□□□□ -1.29
VPS39-213ENST00000570062 SLC22A13Q9Y226 551 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms