RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FBN1P35555 2871 aaKnown RBP17.2■□□□□ 0.34
CLK3-225ENST00000569063 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.2■□□□□ 0.347e-15■■■■□ 20
CLK3-225ENST00000569063 SVEP1Q4LDE5 3571 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 SOX14O95416 240 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 ACSM4P0C7M7 580 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 PCMT1P22061 227 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 TNFSF4P23510 183 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 ERFP50548 548 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 SLC25A1P53007 311 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 SLC3A1Q07837 685 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 SPRNQ5BIV9 151 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 OR2Z1Q8NG97 314 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 MAP6Q96JE9 813 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 ARMC1Q9NVT9 282 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 PTTG3PQ9NZH4 202 aa17.19■□□□□ 0.34
CLK3-225ENST00000569063 F5H5K5 113 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 DNAJC8O75937 253 aaPredicted RBP17.18■□□□□ 0.34
CLK3-225ENST00000569063 MSMBP08118 114 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 ANPEPP15144 967 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 TNFRSF1AP19438 455 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 CRMP1Q14194 572 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 FLOT2Q14254 428 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 GLCCI1Q86VQ1 547 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 ZNF665Q9H7R5 613 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 IL19Q9UHD0 177 aa17.18■□□□□ 0.34
CLK3-225ENST00000569063 GNGT2O14610 69 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 DEAF1O75398 565 aaPredicted RBP17.17■□□□□ 0.34
CLK3-225ENST00000569063 IFNGP01579 166 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 PCK2Q16822 640 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 TMEM179BQ7Z7N9 219 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 PEG10Q86TG7 708 aaKnown RBP17.17■□□□□ 0.34
CLK3-225ENST00000569063 OR8G5Q8NG78 346 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 OR51L1Q8NGJ5 315 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 OR9Q1Q8NGQ5 310 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 OR51F2Q8NH61 342 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 TEX47Q8TBZ9 253 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 TMEM186Q96B77 213 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 RAB39BQ96DA2 213 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 ZNF582Q96NG8 517 aaPredicted RBP17.17■□□□□ 0.34
CLK3-225ENST00000569063 CMC2Q9NRP2 79 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 DDX28Q9NUL7 540 aaKnown RBP17.17■□□□□ 0.34
CLK3-225ENST00000569063 HIF1ANQ9NWT6 349 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 POMPQ9Y244 141 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 COMMD3-BMI1R4GMX3 469 aa17.17■□□□□ 0.34
CLK3-225ENST00000569063 TCRBV3S1A0A5B6 114 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 TVP23AA6NH52 213 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 RIIAD1A6NNX1 92 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 SURF4O15260 269 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 SPI1P17947 270 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 FMO3P31513 532 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 RPS27P42677 84 aaKnown RBP17.16■□□□□ 0.34
CLK3-225ENST00000569063 BLVRAP53004 296 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 TPTEP56180 551 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 TEX30Q5JUR7 227 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 OR2T2Q6IF00 324 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 ACSM5Q6NUN0 579 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 SLC27A4Q6P1M0 643 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 LYPD4Q6UWN0 246 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 CXXC5Q7LFL8 322 aaKnown RBP17.16■□□□□ 0.34
CLK3-225ENST00000569063 NAA40Q86UY6 237 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 SPATA24Q86W54 205 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 OR5AS1Q8N127 324 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 PAPD5Q8NDF8 572 aaKnown RBP17.16■□□□□ 0.34
CLK3-225ENST00000569063 OR10S1Q8NGN2 331 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 OR13G1Q8NGZ3 307 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 YY1AP1Q9H869 796 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 WDR76Q9H967 626 aa17.16■□□□□ 0.34
CLK3-225ENST00000569063 PDP1Q9P0J1 537 aaPredicted RBP17.16■□□□□ 0.34
CLK3-225ENST00000569063 TANC2Q9HCD6 1990 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 IQCF6A8MYZ5 107 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 IGHV2-5P01817 119 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 PSKH1P11801 424 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 ZNF3P17036 446 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 GRK5P34947 590 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 ENTPD1P49961 510 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 BNIP1Q12981 228 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 ZNF283Q8N7M2 679 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 ZNF511Q8NB15 262 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 SPTSSAQ969W0 71 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 OR2V2Q96R30 315 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 HCAR1Q9BXC0 346 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 LPAR2Q9HBW0 351 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 TMEM106BQ9NUM4 274 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 NPTNQ9Y639 398 aa17.15■□□□□ 0.34
CLK3-225ENST00000569063 TRAV20A0A0B4J274 112 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 A0A1B0GWJ7 208 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 H3BN98 237 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 M0R135 149 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 ZNF593O00488 134 aaPredicted RBP17.14■□□□□ 0.33
CLK3-225ENST00000569063 GSC2O15499 205 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 FKBP6O75344 327 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 LCATP04180 440 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 GYPBP06028 91 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 CLUP10909 449 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 SELEP16581 610 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 OTX1P32242 354 aaPredicted RBP17.14■□□□□ 0.33
CLK3-225ENST00000569063 GK2Q14410 553 aaPredicted RBP17.14■□□□□ 0.33
CLK3-225ENST00000569063 DCXRQ7Z4W1 244 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 ATG16L2Q8NAA4 619 aa17.14■□□□□ 0.33
CLK3-225ENST00000569063 ITLN1Q8WWA0 313 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms