RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ESCO2Q56NI9 601 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OTPQ5XKR4 325 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 LCN10Q6JVE6 187 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 FAAP20Q6NZ36 180 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CFAP77Q6ZQR2 320 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 Q6ZSR3 168 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 DOK3Q7L591 496 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZNF627Q7L945 461 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZNF584Q8IVC4 421 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 WDFY1Q8IWB7 410 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZDHHC22Q8N966 263 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR2AK2Q8NG84 335 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR4D6Q8NGJ1 314 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR51S1Q8NGJ8 323 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR1J2Q8NGS2 313 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR2Y1Q8NGV0 311 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 PAQR8Q8TEZ7 354 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 PIGKQ92643 395 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 C10orf35Q96D05 121 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZC3H10Q96K80 434 aaKnown RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 CDX2Q99626 313 aaPredicted RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 PRRT1Q99946 306 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 MESP1Q9BRJ9 268 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 IRF2BPLQ9H1B7 796 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 EXO5Q9H790 373 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CNTD2Q9H8S5 307 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 BEX1Q9HBH7 125 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SH2D2AQ9NP31 389 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 PNRC2Q9NPJ4 139 aaKnown RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 GHRLQ9UBU3 117 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OPN4Q9UHM6 478 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 FBXL2Q9UKC9 423 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ANAPC10Q9UM13 185 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 PLEKHA6Q9Y2H5 1048 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 MAB21L2Q9Y586 359 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 FLVCR1Q9Y5Y0 555 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TDRD6O60522 2096 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 TRANK1O15050 2925 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 RPS10-NUDT3A0A1W2PQS6 291 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 DCDC2BA2VCK2 349 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 SHISA8B8ZZ34 492 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 H3BSH0 61 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 L7N2F9 121 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 RAB27BO00194 218 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 EIF1AYO14602 144 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 LAMTOR5O43504 91 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 RAD1O60671 282 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 IGLV3-1P01715 115 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 RLN1P04808 185 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 CFIP05156 583 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GSTP1P09211 210 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 QDPRP09417 244 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 ZNF735P0CB33 412 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 PRF1P14222 555 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 MSR1P21757 451 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 THBS4P35443 961 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GNALP38405 381 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 FOLR3P41439 243 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GUCA1AP43080 201 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 CBX5P45973 191 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 CSNK1A1P48729 337 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GMFBP60983 142 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 RAB14P61106 215 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 HIST1H3AP68431 136 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 H3F3AP84243 136 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 FGL1Q08830 312 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 CHAF1BQ13112 559 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 EXOSC2Q13868 293 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 GK2Q14410 553 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 ARL6IP1Q15041 203 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GRK1Q15835 563 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 PNLIPRP3Q17RR3 467 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 TMEM176BQ3YBM2 270 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 RNASE10Q5GAN6 216 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 CLVS2Q5SYC1 327 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 HIST2H3PS2Q5TEC6 136 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 B3GNTL1Q67FW5 361 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 FAHD2BQ6P2I3 314 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 CORO6Q6QEF8 472 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 TSSK4Q6SA08 328 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 HIST2H3AQ71DI3 136 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 NAXDQ8IW45 347 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 C12orf45Q8N5I9 185 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 OR8B12Q8NGG6 310 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 TNFAIP8L1Q8WVP5 186 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 KCNE4Q8WWG9 221 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 MR1Q95460 341 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 FGGYQ96C11 551 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 ADAT3Q96EY9 351 aaPredicted RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 ELMOD3Q96FG2 381 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 FAHD2AQ96GK7 314 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 SGCZQ96LD1 299 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 SLX1AQ9BQ83 275 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 PIGQQ9BRB3 760 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 EMC6Q9BV81 110 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 SF3B5Q9BWJ5 86 aaKnown RBP5.54□□□□□ -1.52
CLN3-223ENST00000566472 KCNK15Q9H427 330 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 CA10Q9NS85 328 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 MED9Q9NWA0 146 aa5.54□□□□□ -1.52
CLN3-223ENST00000566472 GLTPQ9NZD2 209 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms