RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ANXA9O76027 345 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 IFNA1P01562 189 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 IGHG4P01861 327 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 BCHEP06276 602 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 FGF7P21781 194 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 FMO4P31512 558 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 ARRB2P32121 409 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CDKN2AP42771 156 aaKnown RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 IER3P46695 156 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SLC6A8P48029 635 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 PIGPP57054 158 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 TCTAP57738 103 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 GNA12Q03113 381 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 BAXQ07812 192 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CD47Q08722 323 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 FABP9Q0Z7S8 132 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SHHQ15465 462 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SURF2Q15527 256 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 ASPHD1Q5U4P2 390 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 FAM71F2Q6NXP2 309 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CDHR3Q6ZTQ4 885 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 LANCL3Q6ZV70 420 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 NUFIP2Q7Z417 695 aaKnown RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 MDGA2Q7Z553 956 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 PARGQ86W56 976 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CBWD2Q8IUF1 395 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 STHQ8IWL8 128 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SLC5A8Q8N695 610 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 HJURPQ8NCD3 748 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 ST6GALNAC3Q8NDV1 305 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 OR51G2Q8NGK0 314 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 RPLP0P6Q8NHW5 317 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 ISOC2Q96AB3 205 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SCMH1Q96GD3 660 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 PYURFQ96I23 114 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 OR52E6Q96RD3 313 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 COPS8Q99627 209 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 CMSS1Q9BQ75 279 aaKnown RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 CBWD1Q9BRT8 395 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SUCNR1Q9BXA5 334 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 ZNF436Q9C0F3 470 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 LHPPQ9H008 270 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 SPATC1LQ9H0A9 340 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 MMP28Q9H239 520 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 ADGRL4Q9HBW9 690 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 RANGRFQ9HD47 186 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 SPHK2Q9NRA0 654 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 C20orf141Q9NUB4 165 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 ANKRD10Q9NXR5 420 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 LGALS13Q9UHV8 139 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 VPREB3Q9UKI3 123 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 FBXO4Q9UKT5 387 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 UBQLN1Q9UMX0 589 aaKnown RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 RNF6Q9Y252 685 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 MAGI2Q86UL8 1455 aa4.47□□□□□ -1.69
VPS35-205ENST00000563984 MED1Q15648 1581 aaPredicted RBP4.47□□□□□ -1.69
VPS35-205ENST00000563984 SNED1Q8TER0 1413 aa4.46□□□□□ -1.69
VPS35-205ENST00000563984 BCORL1Q5H9F3 1711 aa4.46□□□□□ -1.69
VPS35-205ENST00000563984 NALCNQ8IZF0 1738 aa4.46□□□□□ -1.69
VPS35-205ENST00000563984 KIAA1551Q9HCM1 1747 aa4.46□□□□□ -1.69
VPS35-205ENST00000563984 RPS10-NUDT3A0A1W2PQS6 291 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TMEM129A0AVI4 362 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TRAPPC13A5PLN9 417 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 NKX2-6A6NCS4 301 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 FTCDNL1E5RQL4 147 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ZNF587BE7ETH6 402 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 F5H5T6 163 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 F5H768 121 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 H3BMQ9 156 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 AIPO00170 330 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 FCN3O75636 299 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PIAS1O75925 651 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 KCNK2O95069 426 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 GJB5O95377 273 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HLA-AP01891 365 aaKnown RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 RHOCP08134 193 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 C8orf88P0DMB2 117 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HIST1H1EP10412 219 aaKnown RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 HOXB2P14652 356 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 KITLGP21583 273 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PIGAP37287 484 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 DNASE1L1P49184 302 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 FAM3BP58499 235 aaPredicted RBP4.46□□□□□ -1.7
VPS35-205ENST00000563984 GNG3P63215 75 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HBA1P69905 142 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HSPB3Q12988 150 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 GAGE5Q13069 117 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 GAGE6Q13070 117 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 PLA2G7Q13093 441 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ZNF234Q14588 700 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 RSU1Q15404 277 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TEAD2Q15562 447 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 NEDD8Q15843 81 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 DUOXA1Q1HG43 343 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ODF4Q2M2E3 257 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 TFDP3Q5H9I0 405 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 ELFN2Q5R3F8 820 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 COL5A1-AS1Q5SY13 56 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 HIST2H3PS2Q5TEC6 136 aa4.46□□□□□ -1.7
VPS35-205ENST00000563984 DCAF12L2Q5VW00 463 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms