RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 E9PLN8 166 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 NCR1O76036 304 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 FARS2O95363 451 aaKnown RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 UBCP0CG48 685 aaKnown RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 PSKH1P11801 424 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 FCGR2AP12318 317 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 COX6B1P14854 86 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 PTBP1P26599 531 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS39-207ENST00000563692 APEX1P27695 318 aaKnown RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 TALDO1P37837 337 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 RANBP1P43487 201 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CAV3P56539 151 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 PCBD1P61457 104 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 SF3B4Q15427 424 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS39-207ENST00000563692 RGS21Q2M5E4 152 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 NRN1LQ496H8 165 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 PHYHD1Q5SRE7 291 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 BCL2L15Q5TBC7 163 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 OTPQ5XKR4 325 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 SP5Q6BEB4 398 aaPredicted RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 TMEM211Q6ICI0 200 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 SFXN4Q6P4A7 337 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 SYT9Q86SS6 491 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CD163Q86VB7 1156 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 OR13C5Q8NGS8 318 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 FAM57AQ8TBR7 257 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 ABHD3Q8WU67 409 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 TSEN15Q8WW01 171 aaKnown RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 HSD17B8Q92506 261 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 SPTSSAQ969W0 71 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 MARVELD3Q96A59 401 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 WDYHV1Q96HA8 205 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CMTM3Q96MX0 182 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 DERL3Q96Q80 235 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 VKORC1Q9BQB6 163 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CCDC32Q9BV29 185 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 ZNF416Q9BWM5 594 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 LINC00470Q9BZP3 86 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 PPIL3Q9H2H8 161 aaKnown RBP7.86□□□□□ -1.15
VPS39-207ENST00000563692 SP140LQ9H930 580 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CRLF2Q9HC73 371 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 GP6Q9HCN6 339 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 GLRX2Q9NS18 164 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 HHLA2Q9UM44 414 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 CAMK2AQ9UQM7 478 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 EMC9Q9Y3B6 208 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 LHFPL6Q9Y693 200 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 V9GY05 133 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 EML6Q6ZMW3 1958 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 A0A1B0GVC2 190 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SHISA3A0PJX4 238 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SMIM30A4D0T7 59 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 MEGF11A6BM72 1044 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 OR14I1A6ND48 311 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FIGNL2A6NMB9 653 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FAM25AB3EWG3 89 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FAM25CB3EWG5 89 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FAM25GB3EWG6 89 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 UPK1BO75841 260 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 WISP2O76076 250 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 PNPP00491 289 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 IGHG3P01860 377 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 CST2P09228 141 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 EPXP11678 715 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ACHEP22303 614 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 CTSSP25774 331 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 KIR3DL2P43630 455 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SOX2P48431 317 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 DEFA1P59665 94 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 DEFA3P59666 94 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SCRN3Q0VDG4 424 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ECH1Q13011 328 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ODF4Q2M2E3 257 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FAM27D1Q5T7N8 215 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 FAM131AQ6UXB0 335 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 C3P1Q6ZMU1 363 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 P4HA3Q7Z4N8 544 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ABHD12BQ7Z5M8 362 aaPredicted RBP7.85□□□□□ -1.15
VPS39-207ENST00000563692 DOLPP1Q86YN1 238 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 TUSC5Q8IXB3 177 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ZNF100Q8IYN0 542 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 RDH10Q8IZV5 341 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 LRRC18Q8N456 261 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ZNF433Q8N7K0 673 aaPredicted RBP7.85□□□□□ -1.15
VPS39-207ENST00000563692 ZNF283Q8N7M2 679 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 IL17RDQ8NFM7 739 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 ZNF671Q8TAW3 534 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 CA5BP1Q8WTZ4 195 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 TMEM106AQ96A25 262 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SARAFQ96BY9 339 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 KCNJ15Q99712 375 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SH3GL3Q99963 347 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 PBOV1Q9GZY1 135 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 SLCO5A1Q9H2Y9 848 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 TP63Q9H3D4 680 aaPredicted RBP7.85□□□□□ -1.15
VPS39-207ENST00000563692 CALHM2Q9HA72 323 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 BCO1Q9HAY6 547 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 GPR35Q9HC97 309 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 G6PC2Q9NQR9 355 aa7.85□□□□□ -1.15
VPS39-207ENST00000563692 RABL2AQ9UBK7 228 aaPredicted RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms