RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RNF121Q9H920 327 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 G6PC2Q9NQR9 355 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 TUBG2Q9NRH3 451 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 TMEM38BQ9NVV0 291 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PLEK2Q9NYT0 353 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PTTG3PQ9NZH4 202 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 UPB1Q9UBR1 384 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 RAB22AQ9UL26 194 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 SLC5A6Q9Y289 635 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 AK6Q9Y3D8 172 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 PCDHGA9Q9Y5G4 932 aaKnown RBP6.65□□□□□ -1.34
VPS39-204ENST00000561818 LHFPL6Q9Y693 200 aa6.65□□□□□ -1.34
VPS39-204ENST00000561818 PCNX2A6NKB5 2137 aa6.65□□□□□ -1.35
VPS39-204ENST00000561818 A0A1W2PNU3 283 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 SHISA3A0PJX4 238 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 C17orf51A8MQB3 221 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 ZNF814B7Z6K7 855 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SHISA8B8ZZ34 492 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 M0R135 149 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 AQP7O14520 342 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 TFECO14948 347 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 CXCL13O43927 109 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 PEX14O75381 377 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 CEACAM4O75871 244 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 IGHG3P01860 377 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 CRHP06850 196 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 YES1P07947 543 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 HOXD4P09016 255 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 ACSM4P0C7M7 580 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 HLA-DMAP28067 261 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SLC6A1P30531 599 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 CBX5P45973 191 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SOX2P48431 317 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 TNFSF10P50591 281 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 OR10A3P58181 314 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 PLP2Q04941 152 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SNTB2Q13425 540 aaKnown RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 ETFDHQ16134 617 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SGCAQ16586 387 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 ACTBL2Q562R1 376 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 WIPI1Q5MNZ9 446 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 FAM27D1Q5T7N8 215 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 ZNF468Q5VIY5 522 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 AGAP6Q5VW22 663 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 CARD17Q5XLA6 110 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SPINK14Q6IE38 97 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 RPUSD3Q6P087 351 aaKnown RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 TMEM53Q6P2H8 277 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 LYPD4Q6UWN0 246 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 IGFL3Q6UXB1 125 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SLC16A14Q7RTX9 510 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 GALNTL5Q7Z4T8 443 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 TMEM251Q8N6I4 163 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 DRAXINQ8NBI3 349 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 PLPP7Q8NBV4 271 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 STEAP2Q8NFT2 490 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 KCNG3Q8TAE7 436 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SYNPRQ8TBG9 265 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 HSD17B8Q92506 261 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 RGP1Q92546 391 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 TRIM63Q969Q1 353 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 ZDHHC16Q969W1 377 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 APH1AQ96BI3 265 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 FAM3DQ96BQ1 224 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 MRPS24Q96EL2 167 aaKnown RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 ZNF799Q96GE5 643 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 GMPPAQ96IJ6 420 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 ZFP3Q96NJ6 502 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 UCN2Q96RP3 112 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 PHOX2BQ99453 314 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 S100A13Q99584 98 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 SDHCQ99643 169 aaPredicted RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 USB1Q9BQ65 265 aaKnown RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 MARVELD1Q9BSK0 173 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 TTTY10Q9BZA0 68 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 PRDM14Q9GZV8 571 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 ING3Q9NXR8 418 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 TBC1D24Q9ULP9 559 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 NOP16Q9Y3C1 178 aaKnown RBP6.64□□□□□ -1.35
VPS39-204ENST00000561818 CACNG2Q9Y698 323 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 LAMA1P25391 3075 aa6.64□□□□□ -1.35
VPS39-204ENST00000561818 A0A0G2JMP0 313 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 A0A0X1KG70 313 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 A0A1B0GVC2 190 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 GGT3PA6NGU5 568 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 ARGFXA6NJG6 315 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 PRR32B1ATL7 298 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 PSMD9O00233 223 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 PIN1P1O15428 100 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 DOK2O60496 412 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 RBBP9O75884 186 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 NCR1O76036 304 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 IGLV3-1P01715 115 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 CRYABP02511 175 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 TTRP02766 147 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 MAS1P04201 325 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 EIF4EP06730 217 aaKnown RBP6.63□□□□□ -1.35
VPS39-204ENST00000561818 LPLP06858 475 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 PSKH1P11801 424 aa6.63□□□□□ -1.35
VPS39-204ENST00000561818 COL6A3P12111 3177 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms