RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RTP5Q14D33 572 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 RNPS1Q15287 305 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM244Q5VVB8 128 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SFRP4Q6FHJ7 346 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR2A2Q6IF42 318 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 FAM214BQ7L5A3 538 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 VASH1Q7L8A9 365 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TMED4Q7Z7H5 227 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 MS4A15Q8N5U1 240 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CELF2-AS1Q8N7Q2 184 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR51D1Q8NGF3 324 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR10AC1Q8NH08 325 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 FBXW5Q969U6 566 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 COX4I2Q96KJ9 171 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 DIABLOQ9NR28 239 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TAS2R4Q9NYW5 299 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SPRR3Q9UBC9 169 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 STUB1Q9UNE7 303 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 USP34Q70CQ2 3546 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 FAM240BA0A1B0GVZ2 78 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 MS4A18H0YCH9 400 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 BHLHE40O14503 412 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 PHYHO14832 338 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 APOC1P02654 83 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TFP02787 698 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 RAB3AP20336 220 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 FKBP2P26885 142 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ADH6P28332 368 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 PITPNBP48739 271 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR10A3P58181 314 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SPCS2Q15005 226 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 MS4A18Q3C1V0 323 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TBRG1Q3YBR2 411 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF404Q494X3 552 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SPIN3Q5JUX0 258 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GLYATL3Q5SZD4 288 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 UNQ6126/PRO20091Q6UXV3 157 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF517Q6ZMY9 492 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 C9orf106Q8NAJ2 232 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZSCAN4Q8NAM6 433 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR51T1Q8NGJ9 327 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ASB10Q8WXI3 467 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 PIK3IP1Q96FE7 263 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 RSPO3Q9BXY4 272 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ADAM19Q9H013 955 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TP63Q9H3D4 680 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF281Q9Y2X9 895 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF850A8MQ14 1090 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 K7ENP7 123 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 BPNT1O95861 308 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 WNT11O96014 354 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 HOXB9P17482 250 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GNLYP22749 145 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CA6P23280 308 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 PCSK6P29122 969 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 EDDM3BP56851 147 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GNG2P59768 71 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SEC61A1P61619 476 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR8B8Q15620 311 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 AP1ARQ63HQ0 302 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 INO80CQ6PI98 192 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 HAGHLQ6PII5 290 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 BRICD5Q6PL45 260 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ANGPTL5Q86XS5 388 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF679Q8IYX0 411 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SLC22A24Q8N4F4 322 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ARHGEF39Q8N4T4 335 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 SLC30A7Q8NEW0 376 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR5L1Q8NGL2 311 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 OR5D14Q8NGL3 314 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ZNRF4Q8WWF5 429 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GCDHQ92947 438 aaPredicted RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 DUS3LQ96G46 650 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 NEDD4LQ96PU5 975 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 NELFAQ9H3P2 528 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 EVA1AQ9H8M9 152 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 UBTD1Q9HAC8 227 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 GPR35Q9HC97 309 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 ENAMQ9NRM1 1142 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 CNOT2Q9NZN8 540 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 DIMT1Q9UNQ2 313 aaKnown RBP4.81□□□□□ -1.64
VPS13C-209ENST00000560637 TRAPPC4Q9Y296 219 aa4.81□□□□□ -1.64
VPS13C-209ENST00000560637 METTL21EPA6NDL7 271 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ABCD4O14678 606 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ARPC3O15145 178 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SLC22A1O15245 554 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SPRY1O43609 319 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SCGB1D2O95969 90 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ASAH2BP0C7U1 165 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SELEP16581 610 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 RPS4Y1P22090 263 aaKnown RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 STOMP27105 288 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 SNRPGP62308 76 aaKnown RBP4.8□□□□□ -1.64
VPS13C-209ENST00000560637 ELFN2Q5R3F8 820 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM69Q5SWH9 247 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 C1orf185Q5T7R7 199 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 FBXW9Q5XUX1 488 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 BTLAQ7Z6A9 289 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 MDP1Q86V88 176 aa4.8□□□□□ -1.64
VPS13C-209ENST00000560637 C20orf196Q8IYI0 205 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms