RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 KIAA0087Q14695 138 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 GPNMBQ14956 572 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF726P1Q15940 193 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 KYAT1Q16773 422 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 C5orf47Q569G3 176 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF691Q5VV52 312 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 LCN12Q6JVE5 192 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 Q6ZTC4 211 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 USP50Q70EL3 339 aaPredicted RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM179BQ7Z7N9 219 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 RALGPS2Q86X27 583 aaPredicted RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 CRLF3Q8IUI8 442 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM61Q8N0U2 210 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TCP10LQ8TDR4 215 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM239Q8WW34 195 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 FAM151AQ8WW52 585 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 EEF1AKMT3Q96AZ1 226 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SNF8Q96H20 258 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SERPINB12Q96P63 405 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TSSK3Q96PN8 268 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 ATOH8Q96SQ7 321 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SRRQ9GZT4 340 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 NAA50Q9GZZ1 169 aaKnown RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 DEFB127Q9H1M4 99 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SLC38A1Q9H2H9 487 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM38AQ9H6F2 299 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 RPF2Q9H7B2 306 aaKnown RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SLC25A22Q9H936 323 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 CD209Q9NNX6 404 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 VCX3AQ9NNX9 186 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SH2D2AQ9NP31 389 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SLC40A1Q9NP59 571 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 MRPL40Q9NQ50 206 aaKnown RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 OR2S2Q9NQN1 319 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 USE1Q9NZ43 259 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 PRG3Q9Y2Y8 225 aaPredicted RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 SAMHD1Q9Y3Z3 626 aaKnown RBP2.32□□□□□ -2.04
TRAV28-201ENST00000557548 MAP3K15Q6ZN16 1313 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 ROCK1Q13464 1354 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 FHOD3Q2V2M9 1422 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 HCFC1P51610 2035 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 GAPVD1Q14C86 1478 aa2.32□□□□□ -2.04
TRAV28-201ENST00000557548 KIF21BO75037 1637 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ZCCHC11Q5TAX3 1644 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 A0A0J9YXY3 114 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 A0A1B0GVI7 797 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 TSPAN11A1L157 253 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ERI2A8K979 691 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CENPXA8MT69 81 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 HIDE1A8MVS5 230 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 LRRN3E7EW58 273 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 SMKR1H3BMG3 65 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 H7C0C1 242 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 TOX3O15405 576 aaPredicted RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 NUPL2O15504 423 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 EMC8O43402 210 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 SLC19A2O60779 497 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CRLF1O75462 422 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 KRTAP5-8O75690 187 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 VAPBO95292 243 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 AIFM1O95831 613 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ASS1P00966 412 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 HSPB1P04792 205 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ARG1P05089 322 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 IL6P05231 212 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CSF3P09919 207 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 GOLGA8HP0CJ92 632 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CSNK2A2P19784 350 aaPredicted RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CNR1P21554 472 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 BGNP21810 368 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 SERPINB5P36952 375 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ACTR1BP42025 376 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 MAGEA2P43356 314 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 MNAT1P51948 309 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 VSNL1P62760 191 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 REG3AQ06141 175 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 MADCAM1Q13477 382 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 AQP6Q13520 282 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 FZD2Q14332 565 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CAPRIN1Q14444 709 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CLINT1Q14677 625 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 NRF1Q16656 503 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 KHDRBS2Q5VWX1 349 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 THOC7Q6I9Y2 204 aaKnown RBP2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ADNP2Q6IQ32 1131 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CLEC18BQ6UXF7 455 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 C12orf54Q6X4T0 127 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 TMPRSS11AQ6ZMR5 421 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 TMEM150AQ86TG1 271 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ZNF786Q8N393 782 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 PNKDQ8N490 385 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 CD177Q8N6Q3 437 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 ZFP41Q8N8Y5 198 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 MAPK1IP1LQ8NDC0 245 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 OR51F2Q8NH61 342 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 TEX47Q8TBZ9 253 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 C7orf33Q8WU49 177 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 MARC2Q969Z3 335 aa2.31□□□□□ -2.04
TRAV28-201ENST00000557548 DNAJC1Q96KC8 554 aaKnown RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms