RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 IGHG1P01857 330 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 FAM157BP0CG42 384 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF35P13682 527 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 B4GALT1P15291 398 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 FAHP16930 419 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 POU3F2P20265 443 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 GDF1P27539 372 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ERP29P30040 261 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 APOBEC1P41238 236 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CSNK1A1P48729 337 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 DAP3P51398 398 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SIGLEC14Q08ET2 396 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 IL10RAQ13651 578 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 GGTLC2Q14390 218 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PLPPR5Q32ZL2 321 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PHYHD1Q5SRE7 291 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF684Q5T5D7 378 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 DNM1P34Q6PK57 102 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 UNQ9370/PRO34162Q6UXP9 181 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 IDO2Q6ZQW0 420 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 NLRC3Q7RTR2 1065 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ARMC10Q8N2F6 343 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 OR2M3Q8NG83 312 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 COQ8AQ8NI60 647 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF519Q8TB69 540 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CLDN23Q96B33 292 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PADI1Q9ULC6 663 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 NOP16Q9Y3C1 178 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 RHBDD3Q9Y3P4 386 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 LOXL2Q9Y4K0 774 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 NCOR2Q9Y618 2525 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SPTBN4Q9H254 2564 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 A0A0J9YW62 118 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GABARAPH6UMI1 98 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 NPIPB7O75200 414 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GLSO94925 669 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 CFDP00746 253 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 LCATP04180 440 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 UMODP07911 640 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 VSIG10L2P0DP72 767 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GABRR1P24046 479 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 RBMXP38159 391 aaKnown RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 SSR4P51571 173 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 ARHGDIBP52566 201 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GABREP78334 506 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 SORDQ00796 357 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 LAMTOR1Q6IAA8 161 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GLIPR1L1Q6UWM5 242 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 ALKAL2Q6UX46 152 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 BTN2A1Q7KYR7 527 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 RAB11FIP2Q7L804 512 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 TIPARPQ7Z3E1 657 aaKnown RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 KCTD20Q7Z5Y7 419 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 BPIFB2Q8N4F0 458 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 IL22RA1Q8N6P7 574 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF441Q8N8Z8 693 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 BHLHE23Q8NDY6 225 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM104Q8NE00 496 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 LILRB4Q8NHJ6 448 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 CEP192Q8TEP8 1941 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 THOC3Q96J01 351 aaKnown RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 SNX18Q96RF0 628 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GPX7Q96SL4 187 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 PRRG4Q9BZD6 226 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 TWSG1Q9GZX9 223 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 GPR173Q9NS66 373 aa4.96□□□□□ -1.61
LIMA1-215ENST00000552823 AKAP7Q9P0M2 348 aaPredicted RBP4.96□□□□□ -1.61
LIMA1-215ENST00000552823 LRP4O75096 1905 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 A0A1W2PR80 420 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 UBE2QL1A1L167 161 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 E9PLN8 166 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 STMND1H3BQB6 276 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 ERVH48-1M5A8F1 160 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 TNFRSF10AO00220 468 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF780AO75290 641 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-215ENST00000552823 CYB5AP00167 134 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 TTRP02766 147 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 P04436 131 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 ITGB2P05107 769 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 LCN1P31025 176 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 OR3A4PP47883 348 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 CX3CR1P49238 355 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 TNK1Q13470 666 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 COL19A1Q14993 1142 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 PCOLCEQ15113 449 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 DCAF12L2Q5VW00 463 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 STEAP1BQ6NZ63 245 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 C3orf33Q6P1S2 294 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 TMPRSS7Q7RTY8 843 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 TRAPPC6BQ86SZ2 158 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 OR10S1Q8NGN2 331 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 OR1J2Q8NGS2 313 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 MFSD8Q8NHS3 518 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 HGDQ93099 445 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 ULBP2Q9BZM5 246 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 RAB33BQ9H082 229 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 CLEC4MQ9H2X3 399 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-215ENST00000552823 GHITMQ9H3K2 345 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 CALHM2Q9HA72 323 aa4.96□□□□□ -1.62
LIMA1-215ENST00000552823 IFT46Q9NQC8 304 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms