RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 OXGR1Q96P68 337 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 SIGLEC11Q96RL6 698 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 PAFAH2Q99487 392 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 TM2D2Q9BX73 214 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 EGLN1Q9GZT9 426 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 TUBB1Q9H4B7 451 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM106BQ9NUM4 274 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 EXD2Q9NVH0 621 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 SIGLEC9Q9Y336 463 aa5.36□□□□□ -1.55
LIMA1-204ENST00000549064 RNF103-CHMP3A0A140T963 221 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 KIR2DS1A0A191URI9 304 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 CFAP73A6NFT4 308 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 SLC28A1O00337 649 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 FAAHO00519 579 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 LSM1O15116 133 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 MFN2O95140 757 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 AHSA1O95433 338 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 HPRP00739 348 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 HNRNPCP07910 306 aaKnown RBP eCLIP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 LINC00032P0C843 101 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 RPS2P15880 293 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 TCP1P17987 556 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 CBLP22681 906 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 GTF2E2P29084 291 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 IER3P46695 156 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 TNFAIP6P98066 277 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 EGR4Q05215 589 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 PMS2P3Q13401 168 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 NSUN5P1Q3KNT7 163 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 LSM12Q3MHD2 195 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 GPAT3Q53EU6 434 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 THEM4Q5T1C6 240 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 MRPL2Q5T653 305 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 SLC22A9Q8IVM8 553 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 CADM3Q8N126 398 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 ANKFN1Q8N957 763 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 MFSD8Q8NHS3 518 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 PNPT1Q8TCS8 783 aaKnown RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 TXNDC15Q96J42 360 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 ARHGDIGQ99819 225 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 SH3GL3Q99963 347 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 PCGF1Q9BSM1 259 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 C1orf50Q9BV19 199 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 ULBP2Q9BZM5 246 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 MMP28Q9H239 520 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 DENND2DQ9H6A0 471 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-204ENST00000549064 NANOGQ9H9S0 305 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 FN3KRPQ9HA64 309 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 TCF7L2Q9NQB0 619 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 NINJ2Q9NZG7 142 aa5.35□□□□□ -1.55
LIMA1-204ENST00000549064 A0A0U1RQK1 487 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 CENPVL3A0A0U1RRI6 287 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 PLSCR5A0PG75 271 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 POC1B-GALNT4F8VUJ3 575 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 AKAP8O43823 692 aaKnown RBP5.34□□□□□ -1.55
LIMA1-204ENST00000549064 MGRN1O60291 552 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SNAP29O95721 258 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 PRG2P13727 222 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 IGLL1P15814 213 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 CCNOP22674 350 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 GRPRP30550 384 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 MDH2P40926 338 aaKnown RBP5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ACAA2P42765 397 aaKnown RBP5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SERPINB9P50453 376 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 FOXI1Q12951 378 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SYPL1Q16563 259 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 MOGQ16653 247 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TBC1D28Q2M2D7 210 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SMU1Q2TAY7 513 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TTMPQ5BVD1 217 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ATAD3BQ5T9A4 648 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SLC35E4Q6ICL7 350 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 GDPGP1Q6ZNW5 385 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 CFAP77Q6ZQR2 320 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ZCCHC23Q6ZST2 131 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TBC1D26Q86UD7 250 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 PDZD9Q8IXQ8 264 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ZNF101Q8IZC7 436 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ZNF283Q8N7M2 679 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 OR6N1Q8NGY5 312 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SLC25A40Q8TBP6 338 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 MIPOL1Q8TD10 442 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM170AQ8WVE7 144 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 OIT3Q8WWZ8 545 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 LINC00476Q8WZB0 136 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 COQ8BQ96D53 544 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 CCDC126Q96EE4 140 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 THOC1Q96FV9 657 aaKnown RBP5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TBX15Q96SF7 602 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 DUSP26Q9BV47 211 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 BCL2L14Q9BZR8 327 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SEMA6AQ9H2E6 1030 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 SLC38A1Q9H2H9 487 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 OPA3Q9H6K4 179 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 RNF121Q9H920 327 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 TMEM165Q9HC07 324 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 B3GAT2Q9NPZ5 323 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 POLE3Q9NRF9 147 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 ACOXLQ9NUZ1 547 aa5.34□□□□□ -1.55
LIMA1-204ENST00000549064 FBXL3Q9UKT7 428 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms